These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

100 related articles for article (PubMed ID: 20936175)

  • 1. Designing Efficient Spaced Seeds for SOLiD Read Mapping.
    Noé L; Gîrdea M; Kucherov G
    Adv Bioinformatics; 2010; 2010():. PubMed ID: 20936175
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Context-aware seeds for read mapping.
    Xin H; Shao M; Kingsford C
    Algorithms Mol Biol; 2020; 15():10. PubMed ID: 32489399
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds.
    Chen Y; Souaiaia T; Chen T
    Bioinformatics; 2009 Oct; 25(19):2514-21. PubMed ID: 19675096
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Seeding with minimized subsequence.
    Li X; Shi Q; Chen K; Shao M
    Bioinformatics; 2023 Jun; 39(39 Suppl 1):i232-i241. PubMed ID: 37387132
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Entropy predicts sensitivity of pseudorandom seeds.
    Maier BD; Sahlin K
    Genome Res; 2023 Jul; 33(7):1162-1174. PubMed ID: 37217253
    [TBL] [Abstract][Full Text] [Related]  

  • 6. On the accuracy of short read mapping.
    Menzel P; Frellsen J; Plass M; Rasmussen SH; Krogh A
    Methods Mol Biol; 2013; 1038():39-59. PubMed ID: 23872968
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Mismatch-tolerant, alignment-free sequence classification using multiple spaced seeds and multiindex Bloom filters.
    Chu J; Mohamadi H; Erhan E; Tse J; Chiu R; Yeo S; Birol I
    Proc Natl Acad Sci U S A; 2020 Jul; 117(29):16961-16968. PubMed ID: 32641514
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Efficient Seeding for Error-Prone Sequences with SubseqHash2.
    Li X; Chen K; Shao M
    bioRxiv; 2024 Jun; ():. PubMed ID: 38895288
    [TBL] [Abstract][Full Text] [Related]  

  • 9. An empirical study of choosing efficient discriminative seeds for oligonucleotide design.
    Chung WH; Park SB
    BMC Genomics; 2009 Dec; 10 Suppl 3(Suppl 3):S3. PubMed ID: 19958494
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Spaced Seed Data Structures for De Novo Assembly.
    Birol I; Chu J; Mohamadi H; Jackman SD; Raghavan K; Vandervalk BP; Raymond A; Warren RL
    Int J Genomics; 2015; 2015():196591. PubMed ID: 26539459
    [TBL] [Abstract][Full Text] [Related]  

  • 11. LAMSA: fast split read alignment with long approximate matches.
    Liu B; Gao Y; Wang Y
    Bioinformatics; 2017 Jan; 33(2):192-201. PubMed ID: 27667793
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Fast read alignment with incorporation of known genomic variants.
    Guo H; Liu B; Guan D; Fu Y; Wang Y
    BMC Med Inform Decis Mak; 2019 Dec; 19(Suppl 6):265. PubMed ID: 31856811
    [TBL] [Abstract][Full Text] [Related]  

  • 13. An improved encoding of genetic variation in a Burrows-Wheeler transform.
    Büchler T; Ohlebusch E
    Bioinformatics; 2020 Mar; 36(5):1413-1419. PubMed ID: 31613311
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A performant bridge between fixed-size and variable-size seeding.
    Kutzner A; Kim PS; Schmidt M
    BMC Bioinformatics; 2020 Jul; 21(1):328. PubMed ID: 32703211
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Anatomy of a hash-based long read sequence mapping algorithm for next generation DNA sequencing.
    Misra S; Agrawal A; Liao WK; Choudhary A
    Bioinformatics; 2011 Jan; 27(2):189-95. PubMed ID: 21088030
    [TBL] [Abstract][Full Text] [Related]  

  • 16. An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome.
    Ribeiro A; Golicz A; Hackett CA; Milne I; Stephen G; Marshall D; Flavell AJ; Bayer M
    BMC Bioinformatics; 2015 Nov; 16():382. PubMed ID: 26558718
    [TBL] [Abstract][Full Text] [Related]  

  • 17. smsMap: mapping single molecule sequencing reads by locating the alignment starting positions.
    Wei ZG; Zhang SW; Liu F
    BMC Bioinformatics; 2020 Aug; 21(1):341. PubMed ID: 32753028
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Fast and SNP-aware short read alignment with SALT.
    Quan W; Liu B; Wang Y
    BMC Bioinformatics; 2021 Aug; 22(Suppl 9):172. PubMed ID: 34433415
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Designing multiple simultaneous seeds for DNA similarity search.
    Sun Y; Buhler J
    J Comput Biol; 2005; 12(6):847-61. PubMed ID: 16108721
    [TBL] [Abstract][Full Text] [Related]  

  • 20. S-conLSH: alignment-free gapped mapping of noisy long reads.
    Chakraborty A; Morgenstern B; Bandyopadhyay S
    BMC Bioinformatics; 2021 Feb; 22(1):64. PubMed ID: 33573603
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.