These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

106 related articles for article (PubMed ID: 20945881)

  • 41. Effects of Noncanonical Base Pairing on RNA Folding: Structural Context and Spatial Arrangements of G·A Pairs.
    Olson WK; Li S; Kaukonen T; Colasanti AV; Xin Y; Lu XJ
    Biochemistry; 2019 May; 58(20):2474-2487. PubMed ID: 31008589
    [TBL] [Abstract][Full Text] [Related]  

  • 42. A network of heterogeneous hydrogen bonds in GNRA tetraloops.
    Jucker FM; Heus HA; Yip PF; Moors EH; Pardi A
    J Mol Biol; 1996 Dec; 264(5):968-80. PubMed ID: 9000624
    [TBL] [Abstract][Full Text] [Related]  

  • 43. Water and ion binding around r(UpA)12 and d(TpA)12 oligomers--comparison with RNA and DNA (CpG)12 duplexes.
    Auffinger P; Westhof E
    J Mol Biol; 2001 Feb; 305(5):1057-72. PubMed ID: 11162114
    [TBL] [Abstract][Full Text] [Related]  

  • 44. Exploring the changes in the structure of α-helical peptides adsorbed onto a single walled carbon nanotube using classical molecular dynamics simulation.
    Balamurugan K; Gopalakrishnan R; Raman SS; Subramanian V
    J Phys Chem B; 2010 Nov; 114(44):14048-58. PubMed ID: 20923226
    [TBL] [Abstract][Full Text] [Related]  

  • 45. Experimental and theoretical studies of the effects of deoxyribose substitutions on the stability of the UUCG tetraloop.
    Williams DJ; Hall KB
    J Mol Biol; 2000 Mar; 297(1):251-65. PubMed ID: 10704320
    [TBL] [Abstract][Full Text] [Related]  

  • 46. Extracting stacking interaction parameters for RNA from the data set of native structures.
    Dima RI; Hyeon C; Thirumalai D
    J Mol Biol; 2005 Mar; 347(1):53-69. PubMed ID: 15733917
    [TBL] [Abstract][Full Text] [Related]  

  • 47. Role of unsatisfied hydrogen bond acceptors in RNA energetics and specificity.
    Siegfried NA; Kierzek R; Bevilacqua PC
    J Am Chem Soc; 2010 Apr; 132(15):5342-4. PubMed ID: 20345162
    [TBL] [Abstract][Full Text] [Related]  

  • 48. Solution structure of an RNA internal loop with three consecutive sheared GA pairs.
    Chen G; Znosko BM; Kennedy SD; Krugh TR; Turner DH
    Biochemistry; 2005 Mar; 44(8):2845-56. PubMed ID: 15723528
    [TBL] [Abstract][Full Text] [Related]  

  • 49. Nucleic acid base pair dynamics: the impact of sequence and structure using free-energy calculations.
    Giudice E; Lavery R
    J Am Chem Soc; 2003 Apr; 125(17):4998-9. PubMed ID: 12708848
    [TBL] [Abstract][Full Text] [Related]  

  • 50. Stability of RNA hairpin loops closed by AU base pairs.
    Vecenie CJ; Serra MJ
    Biochemistry; 2004 Sep; 43(37):11813-7. PubMed ID: 15362866
    [TBL] [Abstract][Full Text] [Related]  

  • 51. A molecular dynamics simulation of the (dG)6 . (dC)6 minihelix including counterions and water.
    Zielinski TJ; Shibata M
    Biopolymers; 1990; 29(6-7):1027-44. PubMed ID: 2369613
    [TBL] [Abstract][Full Text] [Related]  

  • 52. Stacking interactions involving non-Watson-Crick basepairs: dispersion corrected density functional theory studies.
    Maiti S; Bhattacharyya D
    Phys Chem Chem Phys; 2017 Nov; 19(42):28718-28730. PubMed ID: 29043327
    [TBL] [Abstract][Full Text] [Related]  

  • 53. Temperature effect on poly(dA).poly(dT): molecular dynamics simulation studies of polymeric and oligomeric constructs.
    Mukherjee S; Kundu S; Bhattacharyya D
    J Comput Aided Mol Des; 2014 Jul; 28(7):735-49. PubMed ID: 24865848
    [TBL] [Abstract][Full Text] [Related]  

  • 54. Predicting RNA Duplex Dimerization Free-Energy Changes upon Mutations Using Molecular Dynamics Simulations.
    Sakuraba S; Asai K; Kameda T
    J Phys Chem Lett; 2015 Nov; 6(21):4348-51. PubMed ID: 26722970
    [TBL] [Abstract][Full Text] [Related]  

  • 55. Free-energy landscape and characteristic forces for the initiation of DNA unzipping.
    Mentes A; Florescu AM; Brunk E; Wereszczynski J; Joyeux M; Andricioaei I
    Biophys J; 2015 Apr; 108(7):1727-1738. PubMed ID: 25863064
    [TBL] [Abstract][Full Text] [Related]  

  • 56. Consequences of Mg
    Halder A; Roy R; Bhattacharyya D; Mitra A
    Phys Chem Chem Phys; 2018 Aug; 20(34):21934-21948. PubMed ID: 30088497
    [TBL] [Abstract][Full Text] [Related]  

  • 57. Interactions of cations with RNA loop-loop complexes.
    Singh A; Sethaphong L; Yingling YG
    Biophys J; 2011 Aug; 101(3):727-35. PubMed ID: 21806941
    [TBL] [Abstract][Full Text] [Related]  

  • 58. Capturing RNA Folding Free Energy with Coarse-Grained Molecular Dynamics Simulations.
    Bell DR; Cheng SY; Salazar H; Ren P
    Sci Rep; 2017 Apr; 7():45812. PubMed ID: 28393861
    [TBL] [Abstract][Full Text] [Related]  

  • 59. Kinetic Mechanism of RNA Helix-Terminal Basepairing-A Kinetic Minima Network Analysis.
    Wang F; Sun LZ; Cai P; Chen SJ; Xu X
    Biophys J; 2019 Nov; 117(9):1674-1683. PubMed ID: 31590890
    [TBL] [Abstract][Full Text] [Related]  

  • 60. Characterization and visualization of RNA secondary structure Boltzmann ensemble via information theory.
    Lin L; McKerrow WH; Richards B; Phonsom C; Lawrence CE
    BMC Bioinformatics; 2018 Mar; 19(1):82. PubMed ID: 29506466
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 6.