105 related articles for article (PubMed ID: 2094812)
21. Aqueous hydration of nucleic acid constituents: Monte Carlo computer simulation studies.
Beveridge DL; Maye PV; Jayaram B; Ravishanker G; Mezei M
J Biomol Struct Dyn; 1984 Oct; 2(2):261-70. PubMed ID: 6401130
[TBL] [Abstract][Full Text] [Related]
22. Molecular dynamics of the frame-shifting pseudoknot from beet western yellows virus: the role of non-Watson-Crick base-pairing, ordered hydration, cation binding and base mutations on stability and unfolding.
Csaszar K; Spacková N; Stefl R; Sponer J; Leontis NB
J Mol Biol; 2001 Nov; 313(5):1073-91. PubMed ID: 11700064
[TBL] [Abstract][Full Text] [Related]
23. Stability of nucleic acid base pairs in organic solvents: molecular dynamics, molecular dynamics/quenching, and correlated ab initio study.
Zendlová L; Hobza P; Kabelác M
J Phys Chem B; 2007 Mar; 111(10):2591-609. PubMed ID: 17302446
[TBL] [Abstract][Full Text] [Related]
24. Grand canonical Monte Carlo simulations of water in protein environments.
Woo HJ; Dinner AR; Roux B
J Chem Phys; 2004 Oct; 121(13):6392-400. PubMed ID: 15446937
[TBL] [Abstract][Full Text] [Related]
25. Hydration of Watson-Crick base pairs and dehydration of Hoogsteen base pairs inducing structural polymorphism under molecular crowding conditions.
Miyoshi D; Nakamura K; Tateishi-Karimata H; Ohmichi T; Sugimoto N
J Am Chem Soc; 2009 Mar; 131(10):3522-31. PubMed ID: 19236045
[TBL] [Abstract][Full Text] [Related]
26. Long-range influence of carbohydrates on the solvation dynamics of water--answers from terahertz absorption measurements and molecular modeling simulations.
Heyden M; Bründermann E; Heugen U; Niehues G; Leitner DM; Havenith M
J Am Chem Soc; 2008 Apr; 130(17):5773-9. PubMed ID: 18393415
[TBL] [Abstract][Full Text] [Related]
27. A theoretical study of the aqueous hydration of canonical B d(CGCGAATTCGCG): Monte Carlo simulation and comparison with crystallographic ordered water sites.
Subramanian PS; Beveridge DL
J Biomol Struct Dyn; 1989 Jun; 6(6):1093-122. PubMed ID: 2684218
[TBL] [Abstract][Full Text] [Related]
28. [Simulation of interactions in the co-planar nucleic acid base pairs using atom-atom potential functions].
Poltev VI; Shuliupina NV
Mol Biol (Mosk); 1984; 18(6):1549-61. PubMed ID: 6521736
[TBL] [Abstract][Full Text] [Related]
29. Parallel DNA double helices incorporating isoG or m5isoC bases studied by FTIR, CD and molecular modeling.
Geinguenaud F; Mondragon-Sanchez JA; Liquier J; Shchyolkina AK; Klement R; Arndt-Jovin DJ; Jovin TM; Taillandier E
Spectrochim Acta A Mol Biomol Spectrosc; 2005 Feb; 61(4):579-87. PubMed ID: 15649787
[TBL] [Abstract][Full Text] [Related]
30. A single 2'-hydroxyl group converts B-DNA to A-DNA. Crystal structure of the DNA-RNA chimeric decamer duplex d(CCGGC)r(G)d(CCGG) with a novel intermolecular G-C base-paired quadruplet.
Ban C; Ramakrishnan B; Sundaralingam M
J Mol Biol; 1994 Feb; 236(1):275-85. PubMed ID: 7508984
[TBL] [Abstract][Full Text] [Related]
31. All-atom Monte Carlo simulation of GCAA RNA folding.
Nivón LG; Shakhnovich EI
J Mol Biol; 2004 Nov; 344(1):29-45. PubMed ID: 15504400
[TBL] [Abstract][Full Text] [Related]
32. The role of residue 50 and hydration water molecules in homeodomain DNA recognition.
Duan J; Nilsson L
Eur Biophys J; 2002 Jul; 31(4):306-16. PubMed ID: 12122477
[TBL] [Abstract][Full Text] [Related]
33. Spermine: an "invisible" component in the crystals of B-DNA. A grand canonical Monte Carlo and molecular dynamics simulation study.
Korolev N; Lyubartsev AP; Nordenskiöld L; Laaksonen A
J Mol Biol; 2001 May; 308(5):907-17. PubMed ID: 11352581
[TBL] [Abstract][Full Text] [Related]
34. [Modeling DNA hydration using the Monte Carlo method. Interaction of adenines with water in a nonglycoside A-tract grove stabilizes the B'- conformation].
Teplukhin AV; Zhurkin VB; Dzhernigan R; Poltev VI
Mol Biol (Mosk); 1996; 30(1):121-35. PubMed ID: 8714129
[No Abstract] [Full Text] [Related]
35. Protein-nucleic acid recognition: simulation of base and "model" amino acids complexes in DMSO by the Monte Carlo method.
Danilov VI; Slyusarchuk ON; Poltev VI; Alderfer JL
J Biomol Struct Dyn; 1997 Oct; 15(2):347-55. PubMed ID: 9399160
[TBL] [Abstract][Full Text] [Related]
36. Monte Carlo simulations of the solution structure of simple alcohols in water-acetonitrile mixtures.
Nagy PI; Erhardt PW
J Phys Chem B; 2005 Mar; 109(12):5855-72. PubMed ID: 16851638
[TBL] [Abstract][Full Text] [Related]
37. Monte Carlo molecular simulation of the hydration of K-montmorillonite at 353 K and 625 bar.
Chávez Mde L; de Pablo L; de Pablo JJ
Langmuir; 2004 Nov; 20(24):10764-70. PubMed ID: 15544414
[TBL] [Abstract][Full Text] [Related]
38. Treatment of dilute clusters of methanol and water by ab initio quantum mechanical calculations.
Ruckenstein E; Shulgin IL; Tilson JL
J Phys Chem A; 2005 Feb; 109(5):807-15. PubMed ID: 16838951
[TBL] [Abstract][Full Text] [Related]
39. Water-mediated contacts in the trp-repressor operator complex recognition process.
Wibowo FR; Rauch C; Trieb M; Wellenzohn B; Liedl KR
Biopolymers; 2004 Apr; 73(6):668-81. PubMed ID: 15048770
[TBL] [Abstract][Full Text] [Related]
40. Water and ion binding around RNA and DNA (C,G) oligomers.
Auffinger P; Westhof E
J Mol Biol; 2000 Jul; 300(5):1113-31. PubMed ID: 10903858
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
