BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

152 related articles for article (PubMed ID: 20959380)

  • 1. VEGA: variational segmentation for copy number detection.
    Morganella S; Cerulo L; Viglietto G; Ceccarelli M
    Bioinformatics; 2010 Dec; 26(24):3020-7. PubMed ID: 20959380
    [TBL] [Abstract][Full Text] [Related]  

  • 2. VEGAWES: variational segmentation on whole exome sequencing for copy number detection.
    Anjum S; Morganella S; D'Angelo F; Iavarone A; Ceccarelli M
    BMC Bioinformatics; 2015 Sep; 16():315. PubMed ID: 26416038
    [TBL] [Abstract][Full Text] [Related]  

  • 3. VegaMC: a R/bioconductor package for fast downstream analysis of large array comparative genomic hybridization datasets.
    Morganella S; Ceccarelli M
    Bioinformatics; 2012 Oct; 28(19):2512-4. PubMed ID: 22815357
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Stationary wavelet packet transform and dependent laplacian bivariate shrinkage estimator for array-CGH data smoothing.
    Nguyen N; Huang H; Oraintara S; Vo A
    J Comput Biol; 2010 Feb; 17(2):139-52. PubMed ID: 20078226
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A very fast and accurate method for calling aberrations in array-CGH data.
    Benelli M; Marseglia G; Nannetti G; Paravidino R; Zara F; Bricarelli FD; Torricelli F; Magi A
    Biostatistics; 2010 Jul; 11(3):515-8. PubMed ID: 20207682
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Hybrid algorithms for multiple change-point detection in biological sequences.
    Priyadarshana M; Polushina T; Sofronov G
    Adv Exp Med Biol; 2015; 823():41-61. PubMed ID: 25381101
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Functional performance of aCGH design for clinical cytogenetics.
    Gambin T; Stankiewicz P; Sykulski M; Gambin A
    Comput Biol Med; 2013 Jul; 43(6):775-85. PubMed ID: 23668354
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Finding recurrent copy number alterations preserving within-sample homogeneity.
    Morganella S; Pagnotta SM; Ceccarelli M
    Bioinformatics; 2011 Nov; 27(21):2949-56. PubMed ID: 21873327
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Multiple Break-Points Detection in Array CGH Data via the Cross-Entropy Method.
    Priyadarshana WJ; Sofronov G
    IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(2):487-98. PubMed ID: 26357234
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Heavy-Tailed Noise Suppression and Derivative Wavelet Scalogram for Detecting DNA Copy Number Aberrations.
    Nha Nguyen ; An Vo ; Haibin Sun ; Heng Huang
    IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(5):1625-1635. PubMed ID: 28692986
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Detecting copy number variations from array CGH data based on a conditional random field model.
    Yin XL; Li J
    J Bioinform Comput Biol; 2010 Apr; 8(2):295-314. PubMed ID: 20401947
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Functionally-focused algorithmic analysis of high resolution microarray-CGH genomic landscapes demonstrates comparable genomic copy number aberrations in MSI and MSS sporadic colorectal cancer.
    Ali H; Bitar MS; Al Madhoun A; Marafie M; Al-Mulla F
    PLoS One; 2017; 12(2):e0171690. PubMed ID: 28231327
    [TBL] [Abstract][Full Text] [Related]  

  • 13. ADaCGH: A parallelized web-based application and R package for the analysis of aCGH data.
    Díaz-Uriarte R; Rueda OM
    PLoS One; 2007 Aug; 2(8):e737. PubMed ID: 17710137
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A robust Correntropy-based method for analyzing multisample aCGH data.
    Mohammadi M; Hodtani GA; Yassi M
    Genomics; 2015 Nov; 106(5):257-64. PubMed ID: 26247398
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Genomic alterations of chromosome region 11p as predictive marker by array comparative genomic hybridization in lung adenocarcinoma patients.
    Sung JS; Park KH; Kim YH
    Cancer Genet Cytogenet; 2010 Apr; 198(1):27-34. PubMed ID: 20303011
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Integrating copy number polymorphisms into array CGH analysis using a robust HMM.
    Shah SP; Xuan X; DeLeeuw RJ; Khojasteh M; Lam WL; Ng R; Murphy KP
    Bioinformatics; 2006 Jul; 22(14):e431-9. PubMed ID: 16873504
    [TBL] [Abstract][Full Text] [Related]  

  • 17. An Entropy-Regularized Framework for Detecting Copy Number Variants.
    Mohammadi M; Farahi F
    IEEE Trans Biomed Eng; 2019 Mar; 66(3):682-688. PubMed ID: 29993514
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MSMAD: a computationally efficient method for the analysis of noisy array CGH data.
    Budinska E; Gelnarova E; Schimek MG
    Bioinformatics; 2009 Mar; 25(6):703-13. PubMed ID: 19147666
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A GC-wave correction algorithm that improves the analytical performance of aCGH.
    Leo A; Walker AM; Lebo MS; Hendrickson B; Scholl T; Akmaev VR
    J Mol Diagn; 2012 Nov; 14(6):550-9. PubMed ID: 22922130
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A statistical change point model approach for the detection of DNA copy number variations in array CGH data.
    Chen J; Wang YP
    IEEE/ACM Trans Comput Biol Bioinform; 2009; 6(4):529-41. PubMed ID: 19875853
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.