These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

167 related articles for article (PubMed ID: 20965786)

  • 21. Cosolvent-Based Molecular Dynamics for Ensemble Docking: Practical Method for Generating Druggable Protein Conformations.
    Uehara S; Tanaka S
    J Chem Inf Model; 2017 Apr; 57(4):742-756. PubMed ID: 28388074
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Equilibrium Ensembles for Insulin Folding from Bias-Exchange Metadynamics.
    Singh R; Bansal R; Rathore AS; Goel G
    Biophys J; 2017 Apr; 112(8):1571-1585. PubMed ID: 28445749
    [TBL] [Abstract][Full Text] [Related]  

  • 23. A coarse-grained protein force field for folding and structure prediction.
    Maupetit J; Tuffery P; Derreumaux P
    Proteins; 2007 Nov; 69(2):394-408. PubMed ID: 17600832
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Validating clustering of molecular dynamics simulations using polymer models.
    Phillips JL; Colvin ME; Newsam S
    BMC Bioinformatics; 2011 Nov; 12():445. PubMed ID: 22082218
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Constructing ensembles for intrinsically disordered proteins.
    Fisher CK; Stultz CM
    Curr Opin Struct Biol; 2011 Jun; 21(3):426-31. PubMed ID: 21530234
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Multiscale investigation of chemical interference in proteins.
    Samiotakis A; Homouz D; Cheung MS
    J Chem Phys; 2010 May; 132(17):175101. PubMed ID: 20459186
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Protein folding simulations: from coarse-grained model to all-atom model.
    Zhang J; Li W; Wang J; Qin M; Wu L; Yan Z; Xu W; Zuo G; Wang W
    IUBMB Life; 2009 Jun; 61(6):627-43. PubMed ID: 19472192
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Kinetic pathway analysis of an α-helix in two protonation states: Direct observation and optimal dimensionality reduction.
    Jas GS; Childs EW; Kuczera K
    J Chem Phys; 2019 Feb; 150(7):074902. PubMed ID: 30795683
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Elucidating protein thermodynamics from the three-dimensional structure of the native state using network rigidity.
    Jacobs DJ; Dallakyan S
    Biophys J; 2005 Feb; 88(2):903-15. PubMed ID: 15542549
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Towards a consistent modeling of protein thermodynamic and kinetic cooperativity: how applicable is the transition state picture to folding and unfolding?
    Kaya H; Chan HS
    J Mol Biol; 2002 Jan; 315(4):899-909. PubMed ID: 11812156
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Constructing the equilibrium ensemble of folding pathways from short off-equilibrium simulations.
    Noé F; Schütte C; Vanden-Eijnden E; Reich L; Weikl TR
    Proc Natl Acad Sci U S A; 2009 Nov; 106(45):19011-6. PubMed ID: 19887634
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Calculating ensemble averaged descriptions of protein rigidity without sampling.
    González LC; Wang H; Livesay DR; Jacobs DJ
    PLoS One; 2012; 7(2):e29176. PubMed ID: 22383947
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Cooperativity and modularity in protein folding.
    Sasai M; Chikenji G; Terada TP
    Biophys Physicobiol; 2016; 13():281-293. PubMed ID: 28409080
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Quantifying polypeptide conformational space: sensitivity to conformation and ensemble definition.
    Sullivan DC; Lim C
    J Phys Chem B; 2006 Aug; 110(33):16707-17. PubMed ID: 16913810
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Effects of confinement on thermal stability and folding kinetics in a simple Ising-like model.
    Caraglio M; Pelizzola A
    Phys Biol; 2012 Feb; 9(1):016006. PubMed ID: 22313579
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Molecular dynamics simulations of protein folding.
    Garcia AE
    Methods Mol Biol; 2008; 413():315-30. PubMed ID: 18075171
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Elucidating the ensemble of functionally-relevant transitions in protein systems with a robotics-inspired method.
    Molloy K; Shehu A
    BMC Struct Biol; 2013; 13 Suppl 1(Suppl 1):S8. PubMed ID: 24565158
    [TBL] [Abstract][Full Text] [Related]  

  • 38. A population-based evolutionary search approach to the multiple minima problem in de novo protein structure prediction.
    Saleh S; Olson B; Shehu A
    BMC Struct Biol; 2013; 13 Suppl 1(Suppl 1):S4. PubMed ID: 24565020
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Modelling proteins: conformational sampling and reconstruction of folding kinetics.
    Klenin K; Strodel B; Wales DJ; Wenzel W
    Biochim Biophys Acta; 2011 Aug; 1814(8):977-1000. PubMed ID: 20851219
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Enhancing pairwise state-transition weights: A new weighting scheme in simulated tempering that can minimize transition time between a pair of conformational states.
    Qiao Q; Zhang HD; Huang X
    J Chem Phys; 2016 Apr; 144(15):154107. PubMed ID: 27389209
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.