301 related articles for article (PubMed ID: 20973569)
1. Compid: a new software tool to integrate and compare MS/MS based protein identification results from Mascot and Paragon.
Lietzén N; Natri L; Nevalainen OS; Salmi J; Nyman TA
J Proteome Res; 2010 Dec; 9(12):6795-800. PubMed ID: 20973569
[TBL] [Abstract][Full Text] [Related]
2. An easy-to-use Decoy Database Builder software tool, implementing different decoy strategies for false discovery rate calculation in automated MS/MS protein identifications.
Reidegeld KA; Eisenacher M; Kohl M; Chamrad D; Körting G; Blüggel M; Meyer HE; Stephan C
Proteomics; 2008 Mar; 8(6):1129-37. PubMed ID: 18338823
[TBL] [Abstract][Full Text] [Related]
3. LFQuant: a label-free fast quantitative analysis tool for high-resolution LC-MS/MS proteomics data.
Zhang W; Zhang J; Xu C; Li N; Liu H; Ma J; Zhu Y; Xie H
Proteomics; 2012 Dec; 12(23-24):3475-84. PubMed ID: 23081734
[TBL] [Abstract][Full Text] [Related]
4. The proteios software environment: an extensible multiuser platform for management and analysis of proteomics data.
Häkkinen J; Vincic G; Månsson O; Wårell K; Levander F
J Proteome Res; 2009 Jun; 8(6):3037-43. PubMed ID: 19354269
[TBL] [Abstract][Full Text] [Related]
5. Software pipeline and data analysis for MS/MS proteomics: the trans-proteomic pipeline.
Keller A; Shteynberg D
Methods Mol Biol; 2011; 694():169-89. PubMed ID: 21082435
[TBL] [Abstract][Full Text] [Related]
6. Scaffold: a bioinformatic tool for validating MS/MS-based proteomic studies.
Searle BC
Proteomics; 2010 Mar; 10(6):1265-9. PubMed ID: 20077414
[TBL] [Abstract][Full Text] [Related]
7. emPAI Calc--for the estimation of protein abundance from large-scale identification data by liquid chromatography-tandem mass spectrometry.
Shinoda K; Tomita M; Ishihama Y
Bioinformatics; 2010 Feb; 26(4):576-7. PubMed ID: 20031975
[TBL] [Abstract][Full Text] [Related]
8. XTandem Parser: an open-source library to parse and analyse X!Tandem MS/MS search results.
Muth T; Vaudel M; Barsnes H; Martens L; Sickmann A
Proteomics; 2010 Apr; 10(7):1522-4. PubMed ID: 20140905
[TBL] [Abstract][Full Text] [Related]
9. Virtual expert mass spectrometrist: iTRAQ tool for database-dependent search, quantitation and result storage.
Rodríguez-Suárez E; Gubb E; Alzueta IF; Falcón-Pérez JM; Amorim A; Elortza F; Matthiesen R
Proteomics; 2010 Apr; 10(8):1545-56. PubMed ID: 20140907
[TBL] [Abstract][Full Text] [Related]
10. Comparative evaluation of label-free SINQ normalized spectral index quantitation in the central proteomics facilities pipeline.
Trudgian DC; Ridlova G; Fischer R; Mackeen MM; Ternette N; Acuto O; Kessler BM; Thomas B
Proteomics; 2011 Jul; 11(14):2790-7. PubMed ID: 21656681
[TBL] [Abstract][Full Text] [Related]
11. Web-based MS/MS data analysis.
Lisacek F
Proteomics; 2006 Sep; 6 Suppl 2():22-32. PubMed ID: 17031793
[TBL] [Abstract][Full Text] [Related]
12. VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.
Matthiesen R; Trelle MB; Højrup P; Bunkenborg J; Jensen ON
J Proteome Res; 2005; 4(6):2338-47. PubMed ID: 16335983
[TBL] [Abstract][Full Text] [Related]
13. Grid-based analysis of tandem mass spectrometry data in clinical proteomics.
Quandt A; Hernandez P; Kunzst P; Pautasso C; Tuloup M; Hernandez C; Appel RD
Stud Health Technol Inform; 2007; 126():13-22. PubMed ID: 17476043
[TBL] [Abstract][Full Text] [Related]
14. ProteinQuant Suite: a bundle of automated software tools for label-free quantitative proteomics.
Mann B; Madera M; Sheng Q; Tang H; Mechref Y; Novotny MV
Rapid Commun Mass Spectrom; 2008 Dec; 22(23):3823-34. PubMed ID: 18985620
[TBL] [Abstract][Full Text] [Related]
15. Proteome analysis of the leukocytes from the American alligator (Alligator mississippiensis) using mass spectrometry.
Darville LN; Merchant ME; Hasan A; Murray KK
Comp Biochem Physiol Part D Genomics Proteomics; 2010 Dec; 5(4):308-16. PubMed ID: 20920849
[TBL] [Abstract][Full Text] [Related]
16. Improving peptide identification using an empirical peptide retention time database.
Sun W; Zhang L; Yang R; Shao C; Zhang Z; Gao Y
Rapid Commun Mass Spectrom; 2009 Jan; 23(1):109-18. PubMed ID: 19065623
[TBL] [Abstract][Full Text] [Related]
17. MascotDatfile: an open-source library to fully parse and analyse MASCOT MS/MS search results.
Helsens K; Martens L; Vandekerckhove J; Gevaert K
Proteomics; 2007 Feb; 7(3):364-6. PubMed ID: 17203510
[TBL] [Abstract][Full Text] [Related]
18. SwissPIT: An workflow-based platform for analyzing tandem-MS spectra using the Grid.
Quandt A; Masselot A; Hernandez P; Hernandez C; Maffioletti S; Appel RD; Lisacek F
Proteomics; 2009 May; 9(10):2648-55. PubMed ID: 19391179
[TBL] [Abstract][Full Text] [Related]
19. Computational approaches to peptide identification via tandem MS.
Hubbard SJ
Methods Mol Biol; 2010; 604():23-42. PubMed ID: 20013362
[TBL] [Abstract][Full Text] [Related]
20. Elective affinities--bioinformatic analysis of proteomic mass spectrometry data.
Li X; Pizarro A; Grosser T
Arch Physiol Biochem; 2009 Dec; 115(5):311-9. PubMed ID: 19911947
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]