209 related articles for article (PubMed ID: 20979641)
1. Subdivision of the MDR superfamily of medium-chain dehydrogenases/reductases through iterative hidden Markov model refinement.
Hedlund J; Jörnvall H; Persson B
BMC Bioinformatics; 2010 Oct; 11():534. PubMed ID: 20979641
[TBL] [Abstract][Full Text] [Related]
2. Classification of the short-chain dehydrogenase/reductase superfamily using hidden Markov models.
Kallberg Y; Oppermann U; Persson B
FEBS J; 2010 May; 277(10):2375-86. PubMed ID: 20423462
[TBL] [Abstract][Full Text] [Related]
3. Diversity, taxonomy and evolution of medium-chain dehydrogenase/reductase superfamily.
Riveros-Rosas H; Julián-Sánchez A; Villalobos-Molina R; Pardo JP; Piña E
Eur J Biochem; 2003 Aug; 270(16):3309-34. PubMed ID: 12899689
[TBL] [Abstract][Full Text] [Related]
4. Identification and characterization of subfamily-specific signatures in a large protein superfamily by a hidden Markov model approach.
Truong K; Ikura M
BMC Bioinformatics; 2002; 3():1. PubMed ID: 11818024
[TBL] [Abstract][Full Text] [Related]
5. Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure.
Gough J; Karplus K; Hughey R; Chothia C
J Mol Biol; 2001 Nov; 313(4):903-19. PubMed ID: 11697912
[TBL] [Abstract][Full Text] [Related]
6. Automated protein subfamily identification and classification.
Brown DP; Krishnamurthy N; Sjölander K
PLoS Comput Biol; 2007 Aug; 3(8):e160. PubMed ID: 17708678
[TBL] [Abstract][Full Text] [Related]
7. HIPPI: highly accurate protein family classification with ensembles of HMMs.
Nguyen NP; Nute M; Mirarab S; Warnow T
BMC Genomics; 2016 Nov; 17(Suppl 10):765. PubMed ID: 28185571
[TBL] [Abstract][Full Text] [Related]
8. Meta-MEME: motif-based hidden Markov models of protein families.
Grundy WN; Bailey TL; Elkan CP; Baker ME
Comput Appl Biosci; 1997 Aug; 13(4):397-406. PubMed ID: 9283754
[TBL] [Abstract][Full Text] [Related]
9. A network of SCOP hidden Markov models and its analysis.
Zhang L; Watson LT; Heath LS
BMC Bioinformatics; 2011 May; 12():191. PubMed ID: 21635719
[TBL] [Abstract][Full Text] [Related]
10. Classification and nomenclature of the superfamily of short-chain dehydrogenases/reductases (SDRs).
Persson B; Kallberg Y
Chem Biol Interact; 2013 Feb; 202(1-3):111-5. PubMed ID: 23200746
[TBL] [Abstract][Full Text] [Related]
11. A super-family of medium-chain dehydrogenases/reductases (MDR). Sub-lines including zeta-crystallin, alcohol and polyol dehydrogenases, quinone oxidoreductase enoyl reductases, VAT-1 and other proteins.
Persson B; Zigler JS; Jörnvall H
Eur J Biochem; 1994 Nov; 226(1):15-22. PubMed ID: 7957243
[TBL] [Abstract][Full Text] [Related]
12. Protein classification based on text document classification techniques.
Cheng BY; Carbonell JG; Klein-Seetharaman J
Proteins; 2005 Mar; 58(4):955-70. PubMed ID: 15645499
[TBL] [Abstract][Full Text] [Related]
13. HMMEditor: a visual editing tool for profile hidden Markov model.
Dai J; Cheng J
BMC Genomics; 2008; 9 Suppl 1(Suppl 1):S8. PubMed ID: 18366621
[TBL] [Abstract][Full Text] [Related]
14. HMM-ModE--improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying emission probabilities with negative training sequences.
Srivastava PK; Desai DK; Nandi S; Lynn AM
BMC Bioinformatics; 2007 Mar; 8():104. PubMed ID: 17389042
[TBL] [Abstract][Full Text] [Related]
15. webPRC: the Profile Comparer for alignment-based searching of public domain databases.
Brandt BW; Heringa J
Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W48-52. PubMed ID: 19420063
[TBL] [Abstract][Full Text] [Related]
16. HMMs in Protein Fold Classification.
Lampros C; Papaloukas C; Exarchos T; Fotiadis DI
Methods Mol Biol; 2017; 1552():13-27. PubMed ID: 28224488
[TBL] [Abstract][Full Text] [Related]
17. Profile Hidden Markov Models Are Not Identifiable.
Pattabiraman S; Warnow T
IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(1):162-172. PubMed ID: 31425043
[TBL] [Abstract][Full Text] [Related]
18. High speed biological sequence analysis with hidden Markov models on reconfigurable platforms.
Oliver TF; Schmidt B; Jakop Y; Maskell DL
IEEE Trans Inf Technol Biomed; 2009 Sep; 13(5):740-6. PubMed ID: 19273034
[TBL] [Abstract][Full Text] [Related]
19. Transposable element annotation of the rice genome.
Juretic N; Bureau TE; Bruskiewich RM
Bioinformatics; 2004 Jan; 20(2):155-60. PubMed ID: 14734305
[TBL] [Abstract][Full Text] [Related]
20. Significant speedup of database searches with HMMs by search space reduction with PSSM family models.
Beckstette M; Homann R; Giegerich R; Kurtz S
Bioinformatics; 2009 Dec; 25(24):3251-8. PubMed ID: 19828575
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
