246 related articles for article (PubMed ID: 21030493)
1. Proteogenomic analysis of polymorphisms and gene annotation divergences in prokaryotes using a clustered mass spectrometry-friendly database.
de Souza GA; Arntzen MØ; Fortuin S; Schürch AC; Målen H; McEvoy CR; van Soolingen D; Thiede B; Warren RM; Wiker HG
Mol Cell Proteomics; 2011 Jan; 10(1):M110.002527. PubMed ID: 21030493
[TBL] [Abstract][Full Text] [Related]
2. Proteogenomic analysis of Mycobacterium tuberculosis by high resolution mass spectrometry.
Kelkar DS; Kumar D; Kumar P; Balakrishnan L; Muthusamy B; Yadav AK; Shrivastava P; Marimuthu A; Anand S; Sundaram H; Kingsbury R; Harsha HC; Nair B; Prasad TS; Chauhan DS; Katoch K; Katoch VM; Kumar P; Chaerkady R; Ramachandran S; Dash D; Pandey A
Mol Cell Proteomics; 2011 Dec; 10(12):M111.011627. PubMed ID: 21969609
[TBL] [Abstract][Full Text] [Related]
3. Proteogenomic analysis of Mycobacterium tuberculosis Beijing B0/W148 cluster strains.
Bespyatykh J; Smolyakov A; Guliaev A; Shitikov E; Arapidi G; Butenko I; Dogonadze M; Manicheva O; Ilina E; Zgoda V; Govorun V
J Proteomics; 2019 Feb; 192():18-26. PubMed ID: 30009986
[TBL] [Abstract][Full Text] [Related]
4. Reannotation of translational start sites in the genome of Mycobacterium tuberculosis.
DeJesus MA; Sacchettini JC; Ioerger TR
Tuberculosis (Edinb); 2013 Jan; 93(1):18-25. PubMed ID: 23273318
[TBL] [Abstract][Full Text] [Related]
5. High accuracy mass spectrometry analysis as a tool to verify and improve gene annotation using Mycobacterium tuberculosis as an example.
de Souza GA; Målen H; Søfteland T; Saelensminde G; Prasad S; Jonassen I; Wiker HG
BMC Genomics; 2008 Jul; 9():316. PubMed ID: 18597682
[TBL] [Abstract][Full Text] [Related]
6. MSMSpdbb: providing protein databases of closely related organisms to improve proteomic characterization of prokaryotic microbes.
de Souza GA; Arntzen MØ; Wiker HG
Bioinformatics; 2010 Mar; 26(5):698-9. PubMed ID: 20080508
[TBL] [Abstract][Full Text] [Related]
7. Proteomics reveals open reading frames in Mycobacterium tuberculosis H37Rv not predicted by genomics.
Jungblut PR; Müller EC; Mattow J; Kaufmann SH
Infect Immun; 2001 Sep; 69(9):5905-7. PubMed ID: 11500470
[TBL] [Abstract][Full Text] [Related]
8. A new high-throughput AFLP approach for identification of new genetic polymorphism in the genome of the clonal microorganism Mycobacterium tuberculosis.
van den Braak N; Simons G; Gorkink R; Reijans M; Eadie K; Kremers K; van Soolingen D; Savelkoul P; Verbrugh H; van Belkum A
J Microbiol Methods; 2004 Jan; 56(1):49-62. PubMed ID: 14706750
[TBL] [Abstract][Full Text] [Related]
9. Overview of errors in the reference sequence and annotation of Mycobacterium tuberculosis H37Rv, and variation amongst its isolates.
Köser CU; Niemann S; Summers DK; Archer JA
Infect Genet Evol; 2012 Jun; 12(4):807-10. PubMed ID: 21723422
[TBL] [Abstract][Full Text] [Related]
10. Variation of the Mycobacterium tuberculosis PE_PGRS 33 gene among clinical isolates.
Talarico S; Cave MD; Marrs CF; Foxman B; Zhang L; Yang Z
J Clin Microbiol; 2005 Oct; 43(10):4954-60. PubMed ID: 16207947
[TBL] [Abstract][Full Text] [Related]
11. Proteogenomic Investigation of Strain Variation in Clinical Mycobacterium tuberculosis Isolates.
Heunis T; Dippenaar A; Warren RM; van Helden PD; van der Merwe RG; Gey van Pittius NC; Pain A; Sampson SL; Tabb DL
J Proteome Res; 2017 Oct; 16(10):3841-3851. PubMed ID: 28820946
[TBL] [Abstract][Full Text] [Related]
12. Low frequency of moaA3 gene among the clinical isolates of Mycobacterium tuberculosis from Tamil Nadu and Pondicherry--south eastern coastal states of India.
Sekar B; Arunagiri K; Selvakumar N; Preethi KS; Menaka K
BMC Infect Dis; 2009 Jul; 9():114. PubMed ID: 19630991
[TBL] [Abstract][Full Text] [Related]
13. Genetic heterogeneity revealed by sequence analysis of Mycobacterium tuberculosis isolates from extra-pulmonary tuberculosis patients.
Das S; Roychowdhury T; Kumar P; Kumar A; Kalra P; Singh J; Singh S; Prasad HK; Bhattacharya A
BMC Genomics; 2013 Jun; 14():404. PubMed ID: 23773324
[TBL] [Abstract][Full Text] [Related]
14. [Investigation of the amino acid sequences of open reading frames of the Mycobacterium tuberculosis complete genome with the use of the protein family pattern bank Prof_Pat].
Nizolenko LF; Kozhina EM; Iarygin AA; Bachinskiĭ AG
Biofizika; 2005; 50(6):986-92. PubMed ID: 16358775
[TBL] [Abstract][Full Text] [Related]
15. The PE-PGRS glycine-rich proteins of Mycobacterium tuberculosis: a new family of fibronectin-binding proteins?
Espitia C; Laclette JP; Mondragón-Palomino M; Amador A; Campuzano J; Martens A; Singh M; Cicero R; Zhang Y; Moreno C
Microbiology (Reading); 1999 Dec; 145 ( Pt 12)():3487-3495. PubMed ID: 10627046
[TBL] [Abstract][Full Text] [Related]
16. Experimental determination of translational start sites resolves uncertainties in genomic open reading frame predictions - application to Mycobacterium tuberculosis.
Smollett KL; Fivian-Hughes AS; Smith JE; Chang A; Rao T; Davis EO
Microbiology (Reading); 2009 Jan; 155(Pt 1):186-197. PubMed ID: 19118359
[TBL] [Abstract][Full Text] [Related]
17. [Future prospects of molecular epidemiology in tuberculosis].
Matsumoto T; Iwamoto T
Kekkaku; 2009 Dec; 84(12):783-4. PubMed ID: 20077862
[TBL] [Abstract][Full Text] [Related]
18. Mass Spectrometry-Based Proteomics Analyses Using the OpenProt Database to Unveil Novel Proteins Translated from Non-Canonical Open Reading Frames.
Brunet MA; Roucou X
J Vis Exp; 2019 Apr; (146):. PubMed ID: 31033953
[TBL] [Abstract][Full Text] [Related]
19. Cloning, sequencing, and expression of the apa gene coding for the Mycobacterium tuberculosis 45/47-kilodalton secreted antigen complex.
Laqueyrerie A; Militzer P; Romain F; Eiglmeier K; Cole S; Marchal G
Infect Immun; 1995 Oct; 63(10):4003-10. PubMed ID: 7558311
[TBL] [Abstract][Full Text] [Related]
20. Differentiation of strains in Mycobacterium tuberculosis complex by DNA sequence polymorphisms, including rapid identification of M. bovis BCG.
Frothingham R
J Clin Microbiol; 1995 Apr; 33(4):840-4. PubMed ID: 7790448
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
