130 related articles for article (PubMed ID: 21033674)
1. Evaluation of data analysis strategies for improved mass spectrometry-based phosphoproteomics.
Savitski MM; Scholten A; Sweetman G; Mathieson T; Bantscheff M
Anal Chem; 2010 Dec; 82(23):9843-9. PubMed ID: 21033674
[TBL] [Abstract][Full Text] [Related]
2. An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells.
Bodenmiller B; Mueller LN; Pedrioli PG; Pflieger D; Jünger MA; Eng JK; Aebersold R; Tao WA
Mol Biosyst; 2007 Apr; 3(4):275-86. PubMed ID: 17372656
[TBL] [Abstract][Full Text] [Related]
3. Improved peptide identification for proteomic analysis based on comprehensive characterization of electron transfer dissociation spectra.
Sun RX; Dong MQ; Song CQ; Chi H; Yang B; Xiu LY; Tao L; Jing ZY; Liu C; Wang LH; Fu Y; He SM
J Proteome Res; 2010 Dec; 9(12):6354-67. PubMed ID: 20883037
[TBL] [Abstract][Full Text] [Related]
4. Classification filtering strategy to improve the coverage and sensitivity of phosphoproteome analysis.
Jiang X; Ye M; Han G; Dong X; Zou H
Anal Chem; 2010 Jul; 82(14):6168-75. PubMed ID: 20568719
[TBL] [Abstract][Full Text] [Related]
5. Reversed-phase high-performance liquid chromatographic prefractionation of immunodepleted human serum proteins to enhance mass spectrometry identification of lower-abundant proteins.
Martosella J; Zolotarjova N; Liu H; Nicol G; Boyes BE
J Proteome Res; 2005; 4(5):1522-37. PubMed ID: 16212403
[TBL] [Abstract][Full Text] [Related]
6. Increased confidence in large-scale phosphoproteomics data by complementary mass spectrometric techniques and matching of phosphopeptide data sets.
Alcolea MP; Kleiner O; Cutillas PR
J Proteome Res; 2009 Aug; 8(8):3808-15. PubMed ID: 19537829
[TBL] [Abstract][Full Text] [Related]
7. Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome.
Qian WJ; Liu T; Monroe ME; Strittmatter EF; Jacobs JM; Kangas LJ; Petritis K; Camp DG; Smith RD
J Proteome Res; 2005; 4(1):53-62. PubMed ID: 15707357
[TBL] [Abstract][Full Text] [Related]
8. Pinpointing phosphorylation sites: Quantitative filtering and a novel site-specific x-ion fragment.
Kelstrup CD; Hekmat O; Francavilla C; Olsen JV
J Proteome Res; 2011 Jul; 10(7):2937-48. PubMed ID: 21526838
[TBL] [Abstract][Full Text] [Related]
9. Ethylenediaminetetraacetic acid increases identification rate of phosphoproteomics in real biological samples.
Nakamura T; Myint KT; Oda Y
J Proteome Res; 2010 Mar; 9(3):1385-91. PubMed ID: 20099890
[TBL] [Abstract][Full Text] [Related]
10. Fully automatic separation and identification of phosphopeptides by continuous pH-gradient anion exchange online coupled with reversed-phase liquid chromatography mass spectrometry.
Dai J; Wang LS; Wu YB; Sheng QH; Wu JR; Shieh CH; Zeng R
J Proteome Res; 2009 Jan; 8(1):133-41. PubMed ID: 19053533
[TBL] [Abstract][Full Text] [Related]
11. Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross-validation of MS/MS and MS/MS/MS spectra.
Yu LR; Zhu Z; Chan KC; Issaq HJ; Dimitrov DS; Veenstra TD
J Proteome Res; 2007 Nov; 6(11):4150-62. PubMed ID: 17924679
[TBL] [Abstract][Full Text] [Related]
12. Global profiling of phosphopeptides by titania affinity enrichment.
Wu J; Shakey Q; Liu W; Schuller A; Follettie MT
J Proteome Res; 2007 Dec; 6(12):4684-9. PubMed ID: 17929885
[TBL] [Abstract][Full Text] [Related]
13. Proteomics-grade de novo sequencing approach.
Savitski MM; Nielsen ML; Kjeldsen F; Zubarev RA
J Proteome Res; 2005; 4(6):2348-54. PubMed ID: 16335984
[TBL] [Abstract][Full Text] [Related]
14. Citrate boosts the performance of phosphopeptide analysis by UPLC-ESI-MS/MS.
Winter D; Seidler J; Ziv Y; Shiloh Y; Lehmann WD
J Proteome Res; 2009 Jan; 8(1):418-24. PubMed ID: 19053530
[TBL] [Abstract][Full Text] [Related]
15. Proteome analysis of Sorangium cellulosum employing 2D-HPLC-MS/MS and improved database searching strategies for CID and ETD fragment spectra.
Leinenbach A; Hartmer R; Lubeck M; Kneissl B; Elnakady YA; Baessmann C; Müller R; Huber CG
J Proteome Res; 2009 Sep; 8(9):4350-61. PubMed ID: 19634914
[TBL] [Abstract][Full Text] [Related]
16. Highly robust, automated, and sensitive online TiO2-based phosphoproteomics applied to study endogenous phosphorylation in Drosophila melanogaster.
Pinkse MW; Mohammed S; Gouw JW; van Breukelen B; Vos HR; Heck AJ
J Proteome Res; 2008 Feb; 7(2):687-97. PubMed ID: 18034456
[TBL] [Abstract][Full Text] [Related]
17. Automatic validation of phosphopeptide identifications by the MS2/MS3 target-decoy search strategy.
Jiang X; Han G; Feng S; Jiang X; Ye M; Yao X; Zou H
J Proteome Res; 2008 Apr; 7(4):1640-9. PubMed ID: 18314942
[TBL] [Abstract][Full Text] [Related]
18. Phosphopeptide fragmentation and analysis by mass spectrometry.
Boersema PJ; Mohammed S; Heck AJ
J Mass Spectrom; 2009 Jun; 44(6):861-78. PubMed ID: 19504542
[TBL] [Abstract][Full Text] [Related]
19. Multidimensional strategy for sensitive phosphoproteomics incorporating protein prefractionation combined with SIMAC, HILIC, and TiO(2) chromatography applied to proximal EGF signaling.
Engholm-Keller K; Hansen TA; Palmisano G; Larsen MR
J Proteome Res; 2011 Dec; 10(12):5383-97. PubMed ID: 21955146
[TBL] [Abstract][Full Text] [Related]
20. Extended Range Proteomic Analysis (ERPA): a new and sensitive LC-MS platform for high sequence coverage of complex proteins with extensive post-translational modifications-comprehensive analysis of beta-casein and epidermal growth factor receptor (EGFR).
Wu SL; Kim J; Hancock WS; Karger B
J Proteome Res; 2005; 4(4):1155-70. PubMed ID: 16083266
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
