These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

102 related articles for article (PubMed ID: 21033774)

  • 1. Molecular dynamics at low time resolution.
    Faccioli P
    J Chem Phys; 2010 Oct; 133(16):164106. PubMed ID: 21033774
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Separation of time scale and coupling in the motion governed by the coarse-grained and fine degrees of freedom in a polypeptide backbone.
    Murarka RK; Liwo A; Scheraga HA
    J Chem Phys; 2007 Oct; 127(15):155103. PubMed ID: 17949219
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A Bayesian method for construction of Markov models to describe dynamics on various time-scales.
    Rains EK; Andersen HC
    J Chem Phys; 2010 Oct; 133(14):144113. PubMed ID: 20949993
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Protein simulations using techniques suitable for very large systems: the cell multipole method for nonbond interactions and the Newton-Euler inverse mass operator method for internal coordinate dynamics.
    Mathiowetz AM; Jain A; Karasawa N; Goddard WA
    Proteins; 1994 Nov; 20(3):227-47. PubMed ID: 7892172
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Multiple time step diffusive Langevin dynamics for proteins.
    Eastman P; Doniach S
    Proteins; 1998 Feb; 30(3):215-27. PubMed ID: 9517537
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Inherent speedup limitations in multiple time step/particle mesh Ewald algorithms.
    Barash D; Yang L; Qian X; Schlick T
    J Comput Chem; 2003 Jan; 24(1):77-88. PubMed ID: 12483677
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Collective Langevin dynamics of conformational motions in proteins.
    Lange OF; Grubmüller H
    J Chem Phys; 2006 Jun; 124(21):214903. PubMed ID: 16774438
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Dominant reaction pathways in protein folding: A direct validation against molecular dynamics simulations.
    Faccioli P; Lonardi A; Orland H
    J Chem Phys; 2010 Jul; 133(4):045104. PubMed ID: 20687692
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Effective stochastic dynamics on a protein folding energy landscape.
    Yang S; Onuchic JN; Levine H
    J Chem Phys; 2006 Aug; 125(5):054910. PubMed ID: 16942260
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Implementation of a symplectic multiple-time-step molecular dynamics algorithm, based on the united-residue mesoscopic potential energy function.
    Rakowski F; Grochowski P; Lesyng B; Liwo A; Scheraga HA
    J Chem Phys; 2006 Nov; 125(20):204107. PubMed ID: 17144690
    [TBL] [Abstract][Full Text] [Related]  

  • 11. On the convergence of the conformational coordinates basis set obtained by the essential dynamics analysis of proteins' molecular dynamics simulations.
    Amadei A; Ceruso MA; Di Nola A
    Proteins; 1999 Sep; 36(4):419-24. PubMed ID: 10450083
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Protein dynamics simulations from nanoseconds to microseconds.
    Doniach S; Eastman P
    Curr Opin Struct Biol; 1999 Apr; 9(2):157-63. PubMed ID: 10322213
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Temperature effects on the nucleation mechanism of protein folding and on the barrierless thermal denaturation of a native protein.
    Djikaev YS; Ruckenstein E
    Phys Chem Chem Phys; 2008 Nov; 10(41):6281-300. PubMed ID: 18936853
    [TBL] [Abstract][Full Text] [Related]  

  • 14. On the calculation of velocity-dependent properties in molecular dynamics simulations using the leapfrog integration algorithm.
    Cuendet MA; van Gunsteren WF
    J Chem Phys; 2007 Nov; 127(18):184102. PubMed ID: 18020625
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Event-driven Brownian dynamics for hard spheres.
    Scala A; Voigtmann T; De Michele C
    J Chem Phys; 2007 Apr; 126(13):134109. PubMed ID: 17430018
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Molecular simulation of protein dynamics in nanopores. II. Diffusion.
    Javidpour L; Tabar MR; Sahimi M
    J Chem Phys; 2009 Feb; 130(8):085105. PubMed ID: 19256630
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Colored noise, folding rates and departure from Kramers' behavior.
    Chandra Bag B; Hu CK; Suan Li M
    Phys Chem Chem Phys; 2010 Oct; 12(37):11753-62. PubMed ID: 20725687
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Molecular dynamics simulations of peptides and proteins with a continuum electrostatic model based on screened Coulomb potentials.
    Hassan SA; Mehler EL; Zhang D; Weinstein H
    Proteins; 2003 Apr; 51(1):109-25. PubMed ID: 12596268
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Diffusion on ruffled membrane surfaces.
    Naji A; Brown FL
    J Chem Phys; 2007 Jun; 126(23):235103. PubMed ID: 17600446
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Depth dependent dynamics in the hydration shell of a protein.
    Servantie J; Atilgan C; Atilgan AR
    J Chem Phys; 2010 Aug; 133(8):085101. PubMed ID: 20815594
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.