BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

210 related articles for article (PubMed ID: 21037262)

  • 1. UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DNA interactions.
    Robasky K; Bulyk ML
    Nucleic Acids Res; 2011 Jan; 39(Database issue):D124-8. PubMed ID: 21037262
    [TBL] [Abstract][Full Text] [Related]  

  • 2. UniPROBE: an online database of protein binding microarray data on protein-DNA interactions.
    Newburger DE; Bulyk ML
    Nucleic Acids Res; 2009 Jan; 37(Database issue):D77-82. PubMed ID: 18842628
    [TBL] [Abstract][Full Text] [Related]  

  • 3. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions.
    Hume MA; Barrera LA; Gisselbrecht SS; Bulyk ML
    Nucleic Acids Res; 2015 Jan; 43(Database issue):D117-22. PubMed ID: 25378322
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Universal protein-binding microarrays for the comprehensive characterization of the DNA-binding specificities of transcription factors.
    Berger MF; Bulyk ML
    Nat Protoc; 2009; 4(3):393-411. PubMed ID: 19265799
    [TBL] [Abstract][Full Text] [Related]  

  • 5. hPDI: a database of experimental human protein-DNA interactions.
    Xie Z; Hu S; Blackshaw S; Zhu H; Qian J
    Bioinformatics; 2010 Jan; 26(2):287-9. PubMed ID: 19900953
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Bayesian hierarchical model of protein-binding microarray k-mer data reduces noise and identifies transcription factor subclasses and preferred k-mers.
    Jiang B; Liu JS; Bulyk ML
    Bioinformatics; 2013 Jun; 29(11):1390-8. PubMed ID: 23559638
    [TBL] [Abstract][Full Text] [Related]  

  • 7. DNA motif elucidation using belief propagation.
    Wong KC; Chan TM; Peng C; Li Y; Zhang Z
    Nucleic Acids Res; 2013 Sep; 41(16):e153. PubMed ID: 23814189
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Logo2PWM: a tool to convert sequence logo to position weight matrix.
    Gao Z; Liu L; Ruan J
    BMC Genomics; 2017 Oct; 18(Suppl 6):709. PubMed ID: 28984206
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Convenient determination of protein-binding DNA sequences using quadruple 9-mer-based microarray and DsRed-monomer fusion protein.
    Kim MJ; Chung PJ; Lee TH; Kim TH; Nahm BH; Kim YK
    Methods Mol Biol; 2012; 786():65-77. PubMed ID: 21938620
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Accuracy and reproducibility of protein-DNA microarray technology.
    Field S; Udalova I; Ragoussis J
    Adv Biochem Eng Biotechnol; 2007; 104():87-110. PubMed ID: 17290820
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Phospho.ELM: a database of phosphorylation sites--update 2008.
    Diella F; Gould CM; Chica C; Via A; Gibson TJ
    Nucleic Acids Res; 2008 Jan; 36(Database issue):D240-4. PubMed ID: 17962309
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities.
    Berger MF; Philippakis AA; Qureshi AM; He FS; Estep PW; Bulyk ML
    Nat Biotechnol; 2006 Nov; 24(11):1429-35. PubMed ID: 16998473
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Sequence homology in eukaryotes (SHOE): interactive visual tool for promoter analysis.
    Polouliakh N; Horton P; Shibanai K; Takata K; Ludwig V; Ghosh S; Kitano H
    BMC Genomics; 2018 Sep; 19(1):715. PubMed ID: 30261835
    [TBL] [Abstract][Full Text] [Related]  

  • 14. An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments.
    Liu XS; Brutlag DL; Liu JS
    Nat Biotechnol; 2002 Aug; 20(8):835-9. PubMed ID: 12101404
    [TBL] [Abstract][Full Text] [Related]  

  • 15. TFBSshape: an expanded motif database for DNA shape features of transcription factor binding sites.
    Chiu TP; Xin B; Markarian N; Wang Y; Rohs R
    Nucleic Acids Res; 2020 Jan; 48(D1):D246-D255. PubMed ID: 31665425
    [TBL] [Abstract][Full Text] [Related]  

  • 16. BIPA: a database for protein-nucleic acid interaction in 3D structures.
    Lee S; Blundell TL
    Bioinformatics; 2009 Jun; 25(12):1559-60. PubMed ID: 19357098
    [TBL] [Abstract][Full Text] [Related]  

  • 17. BindN: a web-based tool for efficient prediction of DNA and RNA binding sites in amino acid sequences.
    Wang L; Brown SJ
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W243-8. PubMed ID: 16845003
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Zinc Finger Database (ZiFDB): a repository for information on C2H2 zinc fingers and engineered zinc-finger arrays.
    Fu F; Sander JD; Maeder M; Thibodeau-Beganny S; Joung JK; Dobbs D; Miller L; Voytas DF
    Nucleic Acids Res; 2009 Jan; 37(Database issue):D279-83. PubMed ID: 18812396
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A Comparison Study for DNA Motif Modeling on Protein Binding Microarray.
    Wong KC; Li Y; Peng C; Wong HS
    IEEE/ACM Trans Comput Biol Bioinform; 2016; 13(2):261-71. PubMed ID: 27045826
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A DNA shape-based regulatory score improves position-weight matrix-based recognition of transcription factor binding sites.
    Yang J; Ramsey SA
    Bioinformatics; 2015 Nov; 31(21):3445-50. PubMed ID: 26130577
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.