These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
93 related articles for article (PubMed ID: 21053259)
1. Terminal contributions for duplex oligonucleotide thermodynamic properties in the context of nearest neighbor models. Guerra JC; Licínio P Biopolymers; 2011 Mar; 95(3):194-201. PubMed ID: 21053259 [TBL] [Abstract][Full Text] [Related]
2. Calculation of nucleation free energy for duplex oligomers in the context of nearest neighbor models. Guerra JC Biopolymers; 2013 Aug; 99(8):538-47. PubMed ID: 23712490 [TBL] [Abstract][Full Text] [Related]
3. Correcting for heat capacity and 5'-TA type terminal nearest neighbors improves prediction of DNA melting temperatures using nearest-neighbor thermodynamic models. Hughesman CB; Turner RF; Haynes C Biochemistry; 2011 Apr; 50(13):2642-9. PubMed ID: 21323352 [TBL] [Abstract][Full Text] [Related]
4. A new general model for predicting melting thermodynamics of complementary and mismatched B-form duplexes containing locked nucleic acids: application to probe design for digital PCR detection of somatic mutations. Hughesman C; Fakhfakh K; Bidshahri R; Lund HL; Haynes C Biochemistry; 2015 Feb; 54(6):1338-52. PubMed ID: 25654628 [TBL] [Abstract][Full Text] [Related]
5. Partial thermodynamic parameters for prediction stability and washing behavior of DNA duplexes immobilized on gel matrix. Kunitsyn A; Kochetkova S; Timofeev E; Florentiev V J Biomol Struct Dyn; 1996 Oct; 14(2):239-44. PubMed ID: 8913861 [TBL] [Abstract][Full Text] [Related]
6. Cy3 and Cy5 dyes attached to oligonucleotide terminus stabilize DNA duplexes: predictive thermodynamic model. Moreira BG; You Y; Owczarzy R Biophys Chem; 2015 Mar; 198():36-44. PubMed ID: 25645886 [TBL] [Abstract][Full Text] [Related]
7. Effect of thiazole orange doubly labeled thymidine on DNA duplex formation. Kimura Y; Hanami T; Tanaka Y; de Hoon MJ; Soma T; Harbers M; Lezhava A; Hayashizaki Y; Usui K Biochemistry; 2012 Aug; 51(31):6056-67. PubMed ID: 22765348 [TBL] [Abstract][Full Text] [Related]
8. Role of the heat capacity change in understanding and modeling melting thermodynamics of complementary duplexes containing standard and nucleobase-modified LNA. Hughesman CB; Turner RF; Haynes CA Biochemistry; 2011 Jun; 50(23):5354-68. PubMed ID: 21548576 [TBL] [Abstract][Full Text] [Related]
9. Melting studies of short DNA hairpins: influence of loop sequence and adjoining base pair identity on hairpin thermodynamic stability. Vallone PM; Paner TM; Hilario J; Lane MJ; Faldasz BD; Benight AS Biopolymers; 1999 Oct; 50(4):425-42. PubMed ID: 10423551 [TBL] [Abstract][Full Text] [Related]
10. Improved nearest-neighbor parameters for predicting DNA duplex stability. SantaLucia J; Allawi HT; Seneviratne PA Biochemistry; 1996 Mar; 35(11):3555-62. PubMed ID: 8639506 [TBL] [Abstract][Full Text] [Related]
11. The impact of an exocyclic cytosine adduct on DNA duplex properties: significant thermodynamic consequences despite modest lesion-induced structural alterations. Gelfand CA; Plum GE; Grollman AP; Johnson F; Breslauer KJ Biochemistry; 1998 Sep; 37(36):12507-12. PubMed ID: 9730823 [TBL] [Abstract][Full Text] [Related]