These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

262 related articles for article (PubMed ID: 21062764)

  • 21. A novel data structure to support ultra-fast taxonomic classification of metagenomic sequences with k-mer signatures.
    Liu X; Yu Y; Liu J; Elliott CF; Qian C; Liu J
    Bioinformatics; 2018 Jan; 34(1):171-178. PubMed ID: 29036588
    [TBL] [Abstract][Full Text] [Related]  

  • 22. MetaBinG: using GPUs to accelerate metagenomic sequence classification.
    Jia P; Xuan L; Liu L; Wei C
    PLoS One; 2011; 6(11):e25353. PubMed ID: 22132069
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Factors that affect large subunit ribosomal DNA amplicon sequencing studies of fungal communities: classification method, primer choice, and error.
    Porter TM; Golding GB
    PLoS One; 2012; 7(4):e35749. PubMed ID: 22558215
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Composition-based classification of short metagenomic sequences elucidates the landscapes of taxonomic and functional enrichment of microorganisms.
    Liu J; Wang H; Yang H; Zhang Y; Wang J; Zhao F; Qi J
    Nucleic Acids Res; 2013 Jan; 41(1):e3. PubMed ID: 22941634
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Fast and space-efficient taxonomic classification of long reads with hierarchical interleaved XOR filters.
    Ulrich JU; Renard BY
    Genome Res; 2024 Jul; 34(6):914-924. PubMed ID: 38886068
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Assembling Reads Improves Taxonomic Classification of Species.
    Tran Q; Phan V
    Genes (Basel); 2020 Aug; 11(8):. PubMed ID: 32824429
    [TBL] [Abstract][Full Text] [Related]  

  • 27. MetaSpark: a spark-based distributed processing tool to recruit metagenomic reads to reference genomes.
    Zhou W; Li R; Yuan S; Liu C; Yao S; Luo J; Niu B
    Bioinformatics; 2017 Apr; 33(7):1090-1092. PubMed ID: 28065898
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Classifying short genomic fragments from novel lineages using composition and homology.
    Parks DH; MacDonald NJ; Beiko RG
    BMC Bioinformatics; 2011 Aug; 12():328. PubMed ID: 21827705
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Bayesian mixture analysis for metagenomic community profiling.
    Morfopoulou S; Plagnol V
    Bioinformatics; 2015 Sep; 31(18):2930-8. PubMed ID: 26002885
    [TBL] [Abstract][Full Text] [Related]  

  • 30. MNBC: a multithreaded Minimizer-based Naïve Bayes Classifier for improved metagenomic sequence classification.
    Lu R; Dumonceaux T; Anzar M; Zovoilis A; Antonation K; Barker D; Corbett C; Nadon C; Robertson J; Eagle SHC; Lung O; Rudar J; Surujballi O; Laing C
    Bioinformatics; 2024 Oct; 40(10):. PubMed ID: 39388213
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Metagenomic taxonomic classification using extreme learning machines.
    Rasheed Z; Rangwala H
    J Bioinform Comput Biol; 2012 Oct; 10(5):1250015. PubMed ID: 22849369
    [TBL] [Abstract][Full Text] [Related]  

  • 32. RAIphy: phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles.
    Nalbantoglu OU; Way SF; Hinrichs SH; Sayood K
    BMC Bioinformatics; 2011 Jan; 12():41. PubMed ID: 21281493
    [TBL] [Abstract][Full Text] [Related]  

  • 33. metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences.
    Ander C; Schulz-Trieglaff OB; Stoye J; Cox AJ
    BMC Bioinformatics; 2013; 14 Suppl 5(Suppl 5):S2. PubMed ID: 23734710
    [TBL] [Abstract][Full Text] [Related]  

  • 34. ClassGraph: Improving Metagenomic Read Classification with Overlap Graphs.
    Cavattoni M; Comin M
    J Comput Biol; 2023 Jun; 30(6):633-647. PubMed ID: 37023405
    [TBL] [Abstract][Full Text] [Related]  

  • 35. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
    Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
    Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Metagenomic analysis through the extended Burrows-Wheeler transform.
    Guerrini V; Louza FA; Rosone G
    BMC Bioinformatics; 2020 Sep; 21(Suppl 8):299. PubMed ID: 32938362
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Evaluating the Quantitative Capabilities of Metagenomic Analysis Software.
    Kerepesi C; Grolmusz V
    Curr Microbiol; 2016 May; 72(5):612-6. PubMed ID: 26831696
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Enhancing metagenomic classification with compression-based features.
    Silva JM; Almeida JR
    Artif Intell Med; 2024 Oct; 156():102948. PubMed ID: 39173422
    [TBL] [Abstract][Full Text] [Related]  

  • 39. MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes.
    Pericard P; Dufresne Y; Couderc L; Blanquart S; Touzet H
    Bioinformatics; 2018 Feb; 34(4):585-591. PubMed ID: 29040406
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Exploiting topic modeling to boost metagenomic reads binning.
    Zhang R; Cheng Z; Guan J; Zhou S
    BMC Bioinformatics; 2015; 16 Suppl 5(Suppl 5):S2. PubMed ID: 25859745
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 14.