These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

262 related articles for article (PubMed ID: 21062764)

  • 81. Lambda: the local aligner for massive biological data.
    Hauswedell H; Singer J; Reinert K
    Bioinformatics; 2014 Sep; 30(17):i349-55. PubMed ID: 25161219
    [TBL] [Abstract][Full Text] [Related]  

  • 82. Offline Next Generation Metagenomics Sequence Analysis Using MinION Detection Software (MINDS).
    Deshpande SV; Reed TM; Sullivan RF; Kerkhof LJ; Beigel KM; Wade MM
    Genes (Basel); 2019 Jul; 10(8):. PubMed ID: 31366182
    [TBL] [Abstract][Full Text] [Related]  

  • 83. COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment and paired-end read LinkAge.
    Lu YY; Chen T; Fuhrman JA; Sun F
    Bioinformatics; 2017 Mar; 33(6):791-798. PubMed ID: 27256312
    [TBL] [Abstract][Full Text] [Related]  

  • 84. Phylogeny-based classification of microbial communities.
    Tanaseichuk O; Borneman J; Jiang T
    Bioinformatics; 2014 Feb; 30(4):449-56. PubMed ID: 24369151
    [TBL] [Abstract][Full Text] [Related]  

  • 85. Metagenomic binning through low-density hashing.
    Luo Y; Yu YW; Zeng J; Berger B; Peng J
    Bioinformatics; 2019 Jan; 35(2):219-226. PubMed ID: 30010790
    [TBL] [Abstract][Full Text] [Related]  

  • 86. LiveKraken--real-time metagenomic classification of illumina data.
    Tausch SH; Strauch B; Andrusch A; Loka TP; Lindner MS; Nitsche A; Renard BY
    Bioinformatics; 2018 Nov; 34(21):3750-3752. PubMed ID: 29868852
    [TBL] [Abstract][Full Text] [Related]  

  • 87. Visual analysis of the quantitative composition of metagenomic communities: the AmphoraVizu webserver.
    Kerepesi C; Szalkai B; Grolmusz V
    Microb Ecol; 2015 Apr; 69(3):695-7. PubMed ID: 25296554
    [TBL] [Abstract][Full Text] [Related]  

  • 88. Improving the sensitivity of long read overlap detection using grouped short k-mer matches.
    Du N; Chen J; Sun Y
    BMC Genomics; 2019 Apr; 20(Suppl 2):190. PubMed ID: 30967123
    [TBL] [Abstract][Full Text] [Related]  

  • 89. Benchmarking blast accuracy of genus/phyla classification of metagenomic reads.
    Essinger SD; Rosen GL
    Pac Symp Biocomput; 2010; ():10-20. PubMed ID: 19908353
    [TBL] [Abstract][Full Text] [Related]  

  • 90. TWARIT: an extremely rapid and efficient approach for phylogenetic classification of metagenomic sequences.
    Reddy RM; Mohammed MH; Mande SS
    Gene; 2012 Sep; 505(2):259-65. PubMed ID: 22710135
    [TBL] [Abstract][Full Text] [Related]  

  • 91. Mixture models for analysis of the taxonomic composition of metagenomes.
    Meinicke P; Asshauer KP; Lingner T
    Bioinformatics; 2011 Jun; 27(12):1618-24. PubMed ID: 21546400
    [TBL] [Abstract][Full Text] [Related]  

  • 92. Short clones or long clones? A simulation study on the use of paired reads in metagenomics.
    Mitra S; Schubach M; Huson DH
    BMC Bioinformatics; 2010 Jan; 11 Suppl 1(Suppl 1):S12. PubMed ID: 20122183
    [TBL] [Abstract][Full Text] [Related]  

  • 93. OGRE: Overlap Graph-based metagenomic Read clustEring.
    Balvert M; Luo X; Hauptfeld E; Schönhuth A; Dutilh BE
    Bioinformatics; 2021 May; 37(7):905-912. PubMed ID: 32871010
    [TBL] [Abstract][Full Text] [Related]  

  • 94. MetaGeniE: characterizing human clinical samples using deep metagenomic sequencing.
    Rawat A; Engelthaler DM; Driebe EM; Keim P; Foster JT
    PLoS One; 2014; 9(11):e110915. PubMed ID: 25365329
    [TBL] [Abstract][Full Text] [Related]  

  • 95. Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps.
    Dilthey AT; Jain C; Koren S; Phillippy AM
    Nat Commun; 2019 Jul; 10(1):3066. PubMed ID: 31296857
    [TBL] [Abstract][Full Text] [Related]  

  • 96. A novel semi-supervised algorithm for the taxonomic assignment of metagenomic reads.
    Le VV; Tran LV; Tran HV
    BMC Bioinformatics; 2016 Jan; 17():22. PubMed ID: 26740458
    [TBL] [Abstract][Full Text] [Related]  

  • 97. A sensitive short read homology search tool for paired-end read sequencing data.
    Techa-Angkoon P; Sun Y; Lei J
    BMC Bioinformatics; 2017 Oct; 18(Suppl 12):414. PubMed ID: 29072140
    [TBL] [Abstract][Full Text] [Related]  

  • 98. VirusTaxo: Taxonomic classification of viruses from the genome sequence using k-mer enrichment.
    Raju RS; Al Nahid A; Chondrow Dev P; Islam R
    Genomics; 2022 Jul; 114(4):110414. PubMed ID: 35718090
    [TBL] [Abstract][Full Text] [Related]  

  • 99. MPI-blastn and NCBI-TaxCollector: improving metagenomic analysis with high performance classification and wide taxonomic attachment.
    Dias R; Xavier MG; Rossi FD; Neves MV; Lange TA; Giongo A; De Rose CA; Triplett EW
    J Bioinform Comput Biol; 2014 Jun; 12(3):1450013. PubMed ID: 24969751
    [TBL] [Abstract][Full Text] [Related]  

  • 100. CONSULT-II: accurate taxonomic identification and profiling using locality-sensitive hashing.
    Şapcı AOB; Rachtman E; Mirarab S
    Bioinformatics; 2024 Mar; 40(4):. PubMed ID: 38492564
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 14.