BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

268 related articles for article (PubMed ID: 21063950)

  • 1. Tandem mass spectrometry spectral libraries and library searching.
    Deutsch EW
    Methods Mol Biol; 2011; 696():225-32. PubMed ID: 21063950
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Spectral library searching for peptide identification via tandem MS.
    Lam H; Aebersold R
    Methods Mol Biol; 2010; 604():95-103. PubMed ID: 20013366
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A semi-empirical approach for predicting unobserved peptide MS/MS spectra from spectral libraries.
    Hu Y; Li Y; Lam H
    Proteomics; 2011 Dec; 11(24):4702-11. PubMed ID: 22038894
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Artificial decoy spectral libraries for false discovery rate estimation in spectral library searching in proteomics.
    Lam H; Deutsch EW; Aebersold R
    J Proteome Res; 2010 Jan; 9(1):605-10. PubMed ID: 19916561
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Development and validation of a spectral library searching method for peptide identification from MS/MS.
    Lam H; Deutsch EW; Eddes JS; Eng JK; King N; Stein SE; Aebersold R
    Proteomics; 2007 Mar; 7(5):655-67. PubMed ID: 17295354
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Building and searching tandem mass (MS/MS) spectral libraries for peptide identification in proteomics.
    Lam H; Aebersold R
    Methods; 2011 Aug; 54(4):424-31. PubMed ID: 21277371
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Understanding the improved sensitivity of spectral library searching over sequence database searching in proteomics data analysis.
    Zhang X; Li Y; Shao W; Lam H
    Proteomics; 2011 Mar; 11(6):1075-85. PubMed ID: 21298786
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Spectral library searching in proteomics.
    Griss J
    Proteomics; 2016 Mar; 16(5):729-40. PubMed ID: 26616598
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Protein identification from tandem mass spectra by database searching.
    Edwards NJ
    Methods Mol Biol; 2011; 694():119-38. PubMed ID: 21082432
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries.
    Frewen BE; Merrihew GE; Wu CC; Noble WS; MacCoss MJ
    Anal Chem; 2006 Aug; 78(16):5678-84. PubMed ID: 16906711
    [TBL] [Abstract][Full Text] [Related]  

  • 11. De novo sequencing methods in proteomics.
    Hughes C; Ma B; Lajoie GA
    Methods Mol Biol; 2010; 604():105-21. PubMed ID: 20013367
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Computational approaches to peptide identification via tandem MS.
    Hubbard SJ
    Methods Mol Biol; 2010; 604():23-42. PubMed ID: 20013362
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Sequence similarity-driven proteomics in organisms with unknown genomes by LC-MS/MS and automated de novo sequencing.
    Waridel P; Frank A; Thomas H; Surendranath V; Sunyaev S; Pevzner P; Shevchenko A
    Proteomics; 2007 Jul; 7(14):2318-29. PubMed ID: 17623296
    [TBL] [Abstract][Full Text] [Related]  

  • 14. An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data.
    Mueller LN; Brusniak MY; Mani DR; Aebersold R
    J Proteome Res; 2008 Jan; 7(1):51-61. PubMed ID: 18173218
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Refining similarity scoring to enable decoy-free validation in spectral library searching.
    Shao W; Zhu K; Lam H
    Proteomics; 2013 Nov; 13(22):3273-83. PubMed ID: 24115759
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Denoising peptide tandem mass spectra for spectral libraries: a Bayesian approach.
    Shao W; Lam H
    J Proteome Res; 2013 Jul; 12(7):3223-32. PubMed ID: 23675732
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Improving SRM assay development: a global comparison between triple quadrupole, ion trap, and higher energy CID peptide fragmentation spectra.
    de Graaf EL; Altelaar AF; van Breukelen B; Mohammed S; Heck AJ
    J Proteome Res; 2011 Sep; 10(9):4334-41. PubMed ID: 21726076
    [TBL] [Abstract][Full Text] [Related]  

  • 18. XTandem Parser: an open-source library to parse and analyse X!Tandem MS/MS search results.
    Muth T; Vaudel M; Barsnes H; Martens L; Sickmann A
    Proteomics; 2010 Apr; 10(7):1522-4. PubMed ID: 20140905
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Speeding up tandem mass spectrometry based database searching by peptide and spectrum indexing.
    Li Y; Chi H; Wang LH; Wang HP; Fu Y; Yuan ZF; Li SJ; Liu YS; Sun RX; Zeng R; He SM
    Rapid Commun Mass Spectrom; 2010 Mar; 24(6):807-14. PubMed ID: 20187083
    [TBL] [Abstract][Full Text] [Related]  

  • 20. [Progress in the spectral library based protein identification strategy].
    Yu D; Ma J; Xie Z; Bai M; Zhu Y; Shu K
    Sheng Wu Gong Cheng Xue Bao; 2018 Apr; 34(4):525-536. PubMed ID: 29701026
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.