135 related articles for article (PubMed ID: 21067139)
1. Consecutive terminal GU pairs stabilize RNA helices.
Nguyen MT; Schroeder SJ
Biochemistry; 2010 Dec; 49(49):10574-81. PubMed ID: 21067139
[TBL] [Abstract][Full Text] [Related]
2. 3' terminal nucleotides determine thermodynamic stabilities of mismatches at the ends of RNA helices.
Clanton-Arrowood K; McGurk J; Schroeder SJ
Biochemistry; 2008 Dec; 47(50):13418-27. PubMed ID: 19053257
[TBL] [Abstract][Full Text] [Related]
3. Sequence dependence of the stability of RNA hairpin molecules with six nucleotide loops.
Vecenie CJ; Morrow CV; Zyra A; Serra MJ
Biochemistry; 2006 Feb; 45(5):1400-7. PubMed ID: 16445282
[TBL] [Abstract][Full Text] [Related]
4. Stability of RNA hairpins closed by wobble base pairs.
Giese MR; Betschart K; Dale T; Riley CK; Rowan C; Sprouse KJ; Serra MJ
Biochemistry; 1998 Jan; 37(4):1094-100. PubMed ID: 9454601
[TBL] [Abstract][Full Text] [Related]
5. Thermodynamic stabilities of internal loops with GU closing pairs in RNA.
Schroeder SJ; Turner DH
Biochemistry; 2001 Sep; 40(38):11509-17. PubMed ID: 11560499
[TBL] [Abstract][Full Text] [Related]
6. Thermodynamics of unpaired terminal nucleotides on short RNA helixes correlates with stacking at helix termini in larger RNAs.
Burkard ME; Kierzek R; Turner DH
J Mol Biol; 1999 Jul; 290(5):967-82. PubMed ID: 10438596
[TBL] [Abstract][Full Text] [Related]
7. Conformational determinants of tandem GU mismatches in RNA: insights from molecular dynamics simulations and quantum mechanical calculations.
Pan Y; Priyakumar UD; MacKerell AD
Biochemistry; 2005 Feb; 44(5):1433-43. PubMed ID: 15683228
[TBL] [Abstract][Full Text] [Related]
8. Factors affecting thermodynamic stabilities of RNA 3 x 3 internal loops.
Chen G; Znosko BM; Jiao X; Turner DH
Biochemistry; 2004 Oct; 43(40):12865-76. PubMed ID: 15461459
[TBL] [Abstract][Full Text] [Related]
9. Nuclear magnetic resonance spectroscopy and molecular modeling reveal that different hydrogen bonding patterns are possible for G.U pairs: one hydrogen bond for each G.U pair in r(GGCGUGCC)(2) and two for each G.U pair in r(GAGUGCUC)(2).
Chen X; McDowell JA; Kierzek R; Krugh TR; Turner DH
Biochemistry; 2000 Aug; 39(30):8970-82. PubMed ID: 10913310
[TBL] [Abstract][Full Text] [Related]
10. Investigation of the structural basis for thermodynamic stabilities of tandem GU wobble pairs: NMR structures of (rGGAGUUCC)2 and (rGGAUGUCC)2.
McDowell JA; He L; Chen X; Turner DH
Biochemistry; 1997 Jul; 36(26):8030-8. PubMed ID: 9201950
[TBL] [Abstract][Full Text] [Related]
11. Thermodynamic characterization of single mismatches found in naturally occurring RNA.
Davis AR; Znosko BM
Biochemistry; 2007 Nov; 46(46):13425-36. PubMed ID: 17958380
[TBL] [Abstract][Full Text] [Related]
12. Solution structure of an RNA internal loop with three consecutive sheared GA pairs.
Chen G; Znosko BM; Kennedy SD; Krugh TR; Turner DH
Biochemistry; 2005 Mar; 44(8):2845-56. PubMed ID: 15723528
[TBL] [Abstract][Full Text] [Related]
13. NMR structures of (rGCUGAGGCU)2 and (rGCGGAUGCU)2: probing the structural features that shape the thermodynamic stability of GA pairs.
Tolbert BS; Kennedy SD; Schroeder SJ; Krugh TR; Turner DH
Biochemistry; 2007 Feb; 46(6):1511-22. PubMed ID: 17279616
[TBL] [Abstract][Full Text] [Related]
14. Structures and Energetics of Four Adjacent G·U Pairs That Stabilize an RNA Helix.
Gu X; Mooers BH; Thomas LM; Malone J; Harris S; Schroeder SJ
J Phys Chem B; 2015 Oct; 119(42):13252-61. PubMed ID: 26425937
[TBL] [Abstract][Full Text] [Related]
15. Stability of RNA hairpin loops closed by AU base pairs.
Vecenie CJ; Serra MJ
Biochemistry; 2004 Sep; 43(37):11813-7. PubMed ID: 15362866
[TBL] [Abstract][Full Text] [Related]
16. Effects of salt, polyethylene glycol, and locked nucleic acids on the thermodynamic stabilities of consecutive terminal adenosine mismatches in RNA duplexes.
Gu X; Nguyen MT; Overacre A; Seaton S; Schroeder SJ
J Phys Chem B; 2013 Apr; 117(13):3531-40. PubMed ID: 23480443
[TBL] [Abstract][Full Text] [Related]
17. Thermodynamic contribution and nearest-neighbor parameters of pseudouridine-adenosine base pairs in oligoribonucleotides.
Hudson GA; Bloomingdale RJ; Znosko BM
RNA; 2013 Nov; 19(11):1474-82. PubMed ID: 24062573
[TBL] [Abstract][Full Text] [Related]
18. Structure and thermodynamics of metal binding in the P5 helix of a group I intron ribozyme.
Colmenarejo G; Tinoco I
J Mol Biol; 1999 Jul; 290(1):119-35. PubMed ID: 10388561
[TBL] [Abstract][Full Text] [Related]
19. NMR structure of stem-loop SL2 of the HIV-1 psi RNA packaging signal reveals a novel A-U-A base-triple platform.
Amarasinghe GK; De Guzman RN; Turner RB; Summers MF
J Mol Biol; 2000 May; 299(1):145-56. PubMed ID: 10860728
[TBL] [Abstract][Full Text] [Related]
20. Thermodynamics of single mismatches in RNA duplexes.
Kierzek R; Burkard ME; Turner DH
Biochemistry; 1999 Oct; 38(43):14214-23. PubMed ID: 10571995
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
