78 related articles for article (PubMed ID: 21070832)
1. Rhodobase, a meta-analytical tool for reconstructing gene regulatory networks in a model photosynthetic bacterium.
Moskvin OV; Bolotin D; Wang A; Ivanov PS; Gomelsky M
Biosystems; 2011 Feb; 103(2):125-31. PubMed ID: 21070832
[TBL] [Abstract][Full Text] [Related]
2. Genetic reconstruction of a functional transcriptional regulatory network.
Hu Z; Killion PJ; Iyer VR
Nat Genet; 2007 May; 39(5):683-7. PubMed ID: 17417638
[TBL] [Abstract][Full Text] [Related]
3. cis-regulatory region analysis using BEARR.
Vega VB
Methods Mol Biol; 2006; 338():119-27. PubMed ID: 16888354
[TBL] [Abstract][Full Text] [Related]
4. Genome-wide similarity search for transcription factors and their binding sites in a metal-reducing prokaryote Geobacter sulfurreducens.
Yan B; Lovley DR; Krushkal J
Biosystems; 2007; 90(2):421-41. PubMed ID: 17184904
[TBL] [Abstract][Full Text] [Related]
5. CREME: Cis-Regulatory Module Explorer for the human genome.
Sharan R; Ben-Hur A; Loots GG; Ovcharenko I
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W253-6. PubMed ID: 15215390
[TBL] [Abstract][Full Text] [Related]
6. Interacting regulatory networks in the facultative photosynthetic bacterium, Rhodobacter sphaeroides 2.4.1.
Kaplan S; Eraso J; Roh JH
Biochem Soc Trans; 2005 Feb; 33(Pt 1):51-5. PubMed ID: 15667262
[TBL] [Abstract][Full Text] [Related]
7. Genome-wide partial correlation analysis of Escherichia coli microarray data.
Veiga DF; Vicente FF; Grivet M; de la Fuente A; Vasconcelos AT
Genet Mol Res; 2007 Oct; 6(4):730-42. PubMed ID: 18058701
[TBL] [Abstract][Full Text] [Related]
8. Light-dependent regulation of photosynthesis genes in Rhodobacter sphaeroides 2.4.1 is coordinately controlled by photosynthetic electron transport via the PrrBA two-component system and the photoreceptor AppA.
Happ HN; Braatsch S; Broschek V; Osterloh L; Klug G
Mol Microbiol; 2005 Nov; 58(3):903-14. PubMed ID: 16238636
[TBL] [Abstract][Full Text] [Related]
9. Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors.
Kel AE; Kel-Margoulis OV; Farnham PJ; Bartley SM; Wingender E; Zhang MQ
J Mol Biol; 2001 May; 309(1):99-120. PubMed ID: 11491305
[TBL] [Abstract][Full Text] [Related]
10. Dcode.org anthology of comparative genomic tools.
Loots GG; Ovcharenko I
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W56-64. PubMed ID: 15980535
[TBL] [Abstract][Full Text] [Related]
11. CoryneRegNet 3.0--an interactive systems biology platform for the analysis of gene regulatory networks in corynebacteria and Escherichia coli.
Baumbach J; Wittkop T; Rademacher K; Rahmann S; Brinkrolf K; Tauch A
J Biotechnol; 2007 Apr; 129(2):279-89. PubMed ID: 17229482
[TBL] [Abstract][Full Text] [Related]
12. Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data.
Kim SY; Kim Y
BMC Bioinformatics; 2006 Jul; 7():330. PubMed ID: 16817975
[TBL] [Abstract][Full Text] [Related]
13. iCR: a web tool to identify conserved targets of a regulatory protein across the multiple related prokaryotic species.
Ranjan S; Seshadri J; Vindal V; Yellaboina S; Ranjan A
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W584-7. PubMed ID: 16845075
[TBL] [Abstract][Full Text] [Related]
14. The GlxR regulon of the amino acid producer Corynebacterium glutamicum: Detection of the corynebacterial core regulon and integration into the transcriptional regulatory network model.
Kohl TA; Tauch A
J Biotechnol; 2009 Sep; 143(4):239-46. PubMed ID: 19665500
[TBL] [Abstract][Full Text] [Related]
15. PredictRegulon: a web server for the prediction of the regulatory protein binding sites and operons in prokaryote genomes.
Yellaboina S; Seshadri J; Kumar MS; Ranjan A
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W318-20. PubMed ID: 15215402
[TBL] [Abstract][Full Text] [Related]
16. Regulatory motif finding by logic regression.
Keles S; van der Laan MJ; Vulpe C
Bioinformatics; 2004 Nov; 20(16):2799-811. PubMed ID: 15166027
[TBL] [Abstract][Full Text] [Related]
17. POXO: a web-enabled tool series to discover transcription factor binding sites.
Kankainen M; Pehkonen P; Rosenstöm P; Törönen P; Wong G; Holm L
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W534-40. PubMed ID: 16845065
[TBL] [Abstract][Full Text] [Related]
18. The flagellar hierarchy of Rhodobacter sphaeroides is controlled by the concerted action of two enhancer-binding proteins.
Poggio S; Osorio A; Dreyfus G; Camarena L
Mol Microbiol; 2005 Nov; 58(4):969-83. PubMed ID: 16262784
[TBL] [Abstract][Full Text] [Related]
19. BEARR: Batch Extraction and Analysis of cis-Regulatory Regions.
Vega VB; Bangarusamy DK; Miller LD; Liu ET; Lin CY
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W257-60. PubMed ID: 15215391
[TBL] [Abstract][Full Text] [Related]
20. Statistical methods in integrative analysis for gene regulatory modules.
Zeng L; Wu J; Xie J
Stat Appl Genet Mol Biol; 2008; 7(1):Article 28. PubMed ID: 18976224
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]