281 related articles for article (PubMed ID: 21071426)
21. PDB explorer -- a web based algorithm for protein annotation viewer and 3D visualization.
Nayarisseri A; Shardiwal RK; Yadav M; Kanungo N; Singh P; Shah P; Ahmed S
Interdiscip Sci; 2014 Dec; 6(4):279-84. PubMed ID: 25118648
[TBL] [Abstract][Full Text] [Related]
22. Structure based approach for understanding organism specific recognition of protein-RNA complexes.
Nagarajan R; Chothani SP; Ramakrishnan C; Sekijima M; Gromiha MM
Biol Direct; 2015 Mar; 10():8. PubMed ID: 25886642
[TBL] [Abstract][Full Text] [Related]
23. Struct-NB: predicting protein-RNA binding sites using structural features.
Towfic F; Caragea C; Gemperline DC; Dobbs D; Honavar V
Int J Data Min Bioinform; 2010; 4(1):21-43. PubMed ID: 20300450
[TBL] [Abstract][Full Text] [Related]
24. Automated classification of RNA 3D motifs and the RNA 3D Motif Atlas.
Petrov AI; Zirbel CL; Leontis NB
RNA; 2013 Oct; 19(10):1327-40. PubMed ID: 23970545
[TBL] [Abstract][Full Text] [Related]
25. RsiteDB: a database of protein binding pockets that interact with RNA nucleotide bases.
Shulman-Peleg A; Nussinov R; Wolfson HJ
Nucleic Acids Res; 2009 Jan; 37(Database issue):D369-73. PubMed ID: 18953028
[TBL] [Abstract][Full Text] [Related]
26. RPiRLS: Quantitative Predictions of RNA Interacting with Any Protein of Known Sequence.
Shen WJ; Cui W; Chen D; Zhang J; Xu J
Molecules; 2018 Feb; 23(3):. PubMed ID: 29495575
[TBL] [Abstract][Full Text] [Related]
27. Voronoia: analyzing packing in protein structures.
Rother K; Hildebrand PW; Goede A; Gruening B; Preissner R
Nucleic Acids Res; 2009 Jan; 37(Database issue):D393-5. PubMed ID: 18948293
[TBL] [Abstract][Full Text] [Related]
28. Finding optimal interaction interface alignments between biological complexes.
Cui X; Naveed H; Gao X
Bioinformatics; 2015 Jun; 31(12):i133-41. PubMed ID: 26072475
[TBL] [Abstract][Full Text] [Related]
29. RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures.
Popenda M; Szachniuk M; Blazewicz M; Wasik S; Burke EK; Blazewicz J; Adamiak RW
BMC Bioinformatics; 2010 May; 11():231. PubMed ID: 20459631
[TBL] [Abstract][Full Text] [Related]
30. WebFR3D--a server for finding, aligning and analyzing recurrent RNA 3D motifs.
Petrov AI; Zirbel CL; Leontis NB
Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W50-5. PubMed ID: 21515634
[TBL] [Abstract][Full Text] [Related]
31. Protein-nucleic acid recognition: statistical analysis of atomic interactions and influence of DNA structure.
Lejeune D; Delsaux N; Charloteaux B; Thomas A; Brasseur R
Proteins; 2005 Nov; 61(2):258-71. PubMed ID: 16121397
[TBL] [Abstract][Full Text] [Related]
32. Accurate prediction of RNA-binding protein residues with two discriminative structural descriptors.
Sun M; Wang X; Zou C; He Z; Liu W; Li H
BMC Bioinformatics; 2016 Jun; 17(1):231. PubMed ID: 27266516
[TBL] [Abstract][Full Text] [Related]
33. Protein-RNA interactions: structural characteristics and hotspot amino acids.
Krüger DM; Neubacher S; Grossmann TN
RNA; 2018 Nov; 24(11):1457-1465. PubMed ID: 30093489
[TBL] [Abstract][Full Text] [Related]
34. PDTD: a web-accessible protein database for drug target identification.
Gao Z; Li H; Zhang H; Liu X; Kang L; Luo X; Zhu W; Chen K; Wang X; Jiang H
BMC Bioinformatics; 2008 Feb; 9():104. PubMed ID: 18282303
[TBL] [Abstract][Full Text] [Related]
35. A protein-RNA docking benchmark (I): nonredundant cases.
Barik A; C N; P M; Bahadur RP
Proteins; 2012 Jul; 80(7):1866-71. PubMed ID: 22488669
[TBL] [Abstract][Full Text] [Related]
36. PDB-2-PBv3.0: An updated protein block database.
Karuppasamy MP; Venkateswaran S; Subbiah P
J Bioinform Comput Biol; 2020 Apr; 18(2):2050009. PubMed ID: 32404014
[TBL] [Abstract][Full Text] [Related]
37. DBBP: database of binding pairs in protein-nucleic acid interactions.
Park B; Kim H; Han K
BMC Bioinformatics; 2014; 15 Suppl 15(Suppl 15):S5. PubMed ID: 25474259
[TBL] [Abstract][Full Text] [Related]
38. iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions.
Finn RD; Marshall M; Bateman A
Bioinformatics; 2005 Feb; 21(3):410-2. PubMed ID: 15353450
[TBL] [Abstract][Full Text] [Related]
39. FASTR3D: a fast and accurate search tool for similar RNA 3D structures.
Lai CE; Tsai MY; Liu YC; Wang CW; Chen KT; Lu CL
Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W287-95. PubMed ID: 19435878
[TBL] [Abstract][Full Text] [Related]
40. Exploiting structural and topological information to improve prediction of RNA-protein binding sites.
Maetschke SR; Yuan Z
BMC Bioinformatics; 2009 Oct; 10():341. PubMed ID: 19835626
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]