These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

203 related articles for article (PubMed ID: 21073243)

  • 1. Rule-based modelling and simulation of biochemical systems with molecular finite automata.
    Yang J; Meng X; Hlavacek WS
    IET Syst Biol; 2010 Nov; 4(6):453-66. PubMed ID: 21073243
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Folding small proteins via annealing stochastic approximation Monte Carlo.
    Cheon S; Liang F
    Biosystems; 2011 Sep; 105(3):243-9. PubMed ID: 21679746
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Stochastic approaches for modelling in vivo reactions.
    Turner TE; Schnell S; Burrage K
    Comput Biol Chem; 2004 Jul; 28(3):165-78. PubMed ID: 15261147
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A computational tool for Monte Carlo simulations of biomolecular reaction networks modeled on physical principles.
    Li IT; Mills E; Truong K
    IEEE Trans Nanobioscience; 2010 Mar; 9(1):24-30. PubMed ID: 19887331
    [TBL] [Abstract][Full Text] [Related]  

  • 5. ML-Space: Hybrid Spatial Gillespie and Particle Simulation of Multi-Level Rule-Based Models in Cell Biology.
    Bittig AT; Uhrmacher AM
    IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(6):1339-1349. PubMed ID: 27514063
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Path ensembles and path sampling in nonequilibrium stochastic systems.
    Harland B; Sun SX
    J Chem Phys; 2007 Sep; 127(10):104103. PubMed ID: 17867733
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Stochastic modeling of cellular networks.
    Stewart-Ornstein J; El-Samad H
    Methods Cell Biol; 2012; 110():111-37. PubMed ID: 22482947
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Efficient simulation of intrinsic, extrinsic and external noise in biochemical systems.
    Pischel D; Sundmacher K; Flassig RJ
    Bioinformatics; 2017 Jul; 33(14):i319-i324. PubMed ID: 28881987
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Generalizing Gillespie's Direct Method to Enable Network-Free Simulations.
    Suderman R; Mitra ED; Lin YT; Erickson KE; Feng S; Hlavacek WS
    Bull Math Biol; 2019 Aug; 81(8):2822-2848. PubMed ID: 29594824
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Markov Chain Aggregation and Its Application to Rule-Based Modelling.
    Petrov T
    Methods Mol Biol; 2019; 1945():297-313. PubMed ID: 30945253
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Strategy-Driven Exploration for Rule-Based Models of Biochemical Systems with PORGY.
    Andrei O; Fernández M; Kirchner H; Pinaud B
    Methods Mol Biol; 2019; 1945():43-70. PubMed ID: 30945242
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Executable biochemical space for specification and analysis of biochemical systems.
    Troják M; Šafránek D; Mertová L; Brim L
    PLoS One; 2020; 15(9):e0238838. PubMed ID: 32915842
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A comparison of deterministic and stochastic approaches for sensitivity analysis in computational systems biology.
    Simoni G; Vo HT; Priami C; Marchetti L
    Brief Bioinform; 2020 Mar; 21(2):527-540. PubMed ID: 30753281
    [TBL] [Abstract][Full Text] [Related]  

  • 14. 'On-the-fly' or 'generate-first' modeling?
    Blinov ML; Faeder JR; Yang J; Goldstein B; Hlavacek WS
    Nat Biotechnol; 2005 Nov; 23(11):1344-5; author reply 1345. PubMed ID: 16273053
    [No Abstract]   [Full Text] [Related]  

  • 15. MCell-R: A Particle-Resolution Network-Free Spatial Modeling Framework.
    Tapia JJ; Saglam AS; Czech J; Kuczewski R; Bartol TM; Sejnowski TJ; Faeder JR
    Methods Mol Biol; 2019; 1945():203-229. PubMed ID: 30945248
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Formal modeling of a system of chemical reactions under uncertainty.
    Ghosh K; Schlipf J
    J Bioinform Comput Biol; 2014 Oct; 12(5):1440002. PubMed ID: 25362839
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Artificial life simulation of self-assembly in bacteriophage by movable finite automata.
    Shirayama M; Koshino M; Hatakeyama T; Kimura H
    Biosystems; 2004 Nov; 77(1-3):151-61. PubMed ID: 15527954
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Extending rule-based methods to model molecular geometry and 3D model resolution.
    Hoard B; Jacobson B; Manavi K; Tapia L
    BMC Syst Biol; 2016 Aug; 10 Suppl 2(Suppl 2):48. PubMed ID: 27490268
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Biochemical simulations: stochastic, approximate stochastic and hybrid approaches.
    Pahle J
    Brief Bioinform; 2009 Jan; 10(1):53-64. PubMed ID: 19151097
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Parameter inference for discretely observed stochastic kinetic models using stochastic gradient descent.
    Wang Y; Christley S; Mjolsness E; Xie X
    BMC Syst Biol; 2010 Jul; 4():99. PubMed ID: 20663171
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.