135 related articles for article (PubMed ID: 21076775)
1. Predicting the coordination geometry for Mg2+ in the p53 DNA-binding domain: insights from computational studies.
Wang T; Shao X; Cai W; Xue Y; Wang S; Feng X
Phys Chem Chem Phys; 2011 Jan; 13(3):1140-51. PubMed ID: 21076775
[TBL] [Abstract][Full Text] [Related]
2. Effect of metal ion on the structural stability of tumour suppressor protein p53 DNA-binding domain.
Xue Y; Wang S; Feng X
J Biochem; 2009 Aug; 146(2):193-200. PubMed ID: 19346293
[TBL] [Abstract][Full Text] [Related]
3. Influence of magnesium ion on the binding of p53 DNA-binding domain to DNA-response elements.
Xue Y; Wang S; Feng X
J Biochem; 2009 Jul; 146(1):77-85. PubMed ID: 19297420
[TBL] [Abstract][Full Text] [Related]
4. Effect of Zn2+ on DNA recognition and stability of the p53 DNA-binding domain.
Duan J; Nilsson L
Biochemistry; 2006 Jun; 45(24):7483-92. PubMed ID: 16768444
[TBL] [Abstract][Full Text] [Related]
5. Molecular dynamics study of zinc binding to cysteines in a peptide mimic of the alcohol dehydrogenase structural zinc site.
Brandt EG; Hellgren M; Brinck T; Bergman T; Edholm O
Phys Chem Chem Phys; 2009 Feb; 11(6):975-83. PubMed ID: 19177216
[TBL] [Abstract][Full Text] [Related]
6. Coordination number of zinc ions in the phosphotriesterase active site by molecular dynamics and quantum mechanics.
Koca J; Zhan CG; Rittenhouse RC; Ornstein RL
J Comput Chem; 2003 Feb; 24(3):368-78. PubMed ID: 12548728
[TBL] [Abstract][Full Text] [Related]
7. Docking study and free energy simulation of the complex between p53 DNA-binding domain and azurin.
De Grandis V; Bizzarri AR; Cannistraro S
J Mol Recognit; 2007; 20(4):215-26. PubMed ID: 17703463
[TBL] [Abstract][Full Text] [Related]
8. A quantum mechanical investigation of possible mechanisms for the nucleotidyl transfer reaction catalyzed by DNA polymerase beta.
Bojin MD; Schlick T
J Phys Chem B; 2007 Sep; 111(38):11244-52. PubMed ID: 17764165
[TBL] [Abstract][Full Text] [Related]
9. Active site dynamics and combined quantum mechanics/molecular mechanics (QM/MM) modelling of a HIV-1 reverse transcriptase/DNA/dTTP complex.
Rungrotmongkol T; Mulholland AJ; Hannongbua S
J Mol Graph Model; 2007 Jul; 26(1):1-13. PubMed ID: 17046299
[TBL] [Abstract][Full Text] [Related]
10. Structure and dynamics of the hydration shells of the Zn(2+) ion from ab initio molecular dynamics and combined ab initio and classical molecular dynamics simulations.
Cauët E; Bogatko S; Weare JH; Fulton JL; Schenter GK; Bylaska EJ
J Chem Phys; 2010 May; 132(19):194502. PubMed ID: 20499974
[TBL] [Abstract][Full Text] [Related]
11. Electrostatic versus nonelectrostatic effects in DNA sequence discrimination by divalent ions Mg2+ and Mn2+.
Solt I; Simon I; Császár AG; Fuxreiter M
J Phys Chem B; 2007 Jun; 111(22):6272-9. PubMed ID: 17497910
[TBL] [Abstract][Full Text] [Related]
12. The role of the putative catalytic base in the phosphoryl transfer reaction in a protein kinase: first-principles calculations.
Valiev M; Kawai R; Adams JA; Weare JH
J Am Chem Soc; 2003 Aug; 125(33):9926-7. PubMed ID: 12914447
[TBL] [Abstract][Full Text] [Related]
13. Binding of calcium and other metal ions to the EF-hand loops of calmodulin studied by quantum chemical calculations and molecular dynamics simulations.
Lepsík M; Field MJ
J Phys Chem B; 2007 Aug; 111(33):10012-22. PubMed ID: 17661504
[TBL] [Abstract][Full Text] [Related]
14. High-affinity binding of tumor-suppressor protein p53 and HMGB1 to hemicatenated DNA loops.
Stros M; Muselíková-Polanská E; Pospísilová S; Strauss F
Biochemistry; 2004 Jun; 43(22):7215-25. PubMed ID: 15170359
[TBL] [Abstract][Full Text] [Related]
15. Structural basis of restoring sequence-specific DNA binding and transactivation to mutant p53 by suppressor mutations.
Suad O; Rozenberg H; Brosh R; Diskin-Posner Y; Kessler N; Shimon LJ; Frolow F; Liran A; Rotter V; Shakked Z
J Mol Biol; 2009 Jan; 385(1):249-65. PubMed ID: 18996393
[TBL] [Abstract][Full Text] [Related]
16. A computational investigation of allostery in the catabolite activator protein.
Li L; Uversky VN; Dunker AK; Meroueh SO
J Am Chem Soc; 2007 Dec; 129(50):15668-76. PubMed ID: 18041838
[TBL] [Abstract][Full Text] [Related]
17. Structure, function, and aggregation of the zinc-free form of the p53 DNA binding domain.
Butler JS; Loh SN
Biochemistry; 2003 Mar; 42(8):2396-403. PubMed ID: 12600206
[TBL] [Abstract][Full Text] [Related]
18. Molecular dynamics simulations of Zn(2+) coordination in protein binding sites.
Tjörnhammar R; Edholm O
J Chem Phys; 2010 May; 132(20):205101. PubMed ID: 20515113
[TBL] [Abstract][Full Text] [Related]
19. Sequence-specific Mg2+-DNA interactions: a molecular dynamics simulation study.
Li W; Nordenskiöld L; Mu Y
J Phys Chem B; 2011 Dec; 115(49):14713-20. PubMed ID: 22035057
[TBL] [Abstract][Full Text] [Related]
20. Mapping the protein-DNA interface and the metal-binding site of the major human apurinic/apyrimidinic endonuclease.
Nguyen LH; Barsky D; Erzberger JP; Wilson DM
J Mol Biol; 2000 May; 298(3):447-59. PubMed ID: 10772862
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
