209 related articles for article (PubMed ID: 21079665)
1. Networks of high mutual information define the structural proximity of catalytic sites: implications for catalytic residue identification.
Marino Buslje C; Teppa E; Di Doménico T; Delfino JM; Nielsen M
PLoS Comput Biol; 2010 Nov; 6(11):e1000978. PubMed ID: 21079665
[TBL] [Abstract][Full Text] [Related]
2. Disentangling evolutionary signals: conservation, specificity determining positions and coevolution. Implication for catalytic residue prediction.
Teppa E; Wilkins AD; Nielsen M; Buslje CM
BMC Bioinformatics; 2012 Sep; 13():235. PubMed ID: 22978315
[TBL] [Abstract][Full Text] [Related]
3. Rapid catalytic template searching as an enzyme function prediction procedure.
Nilmeier JP; Kirshner DA; Wong SE; Lightstone FC
PLoS One; 2013; 8(5):e62535. PubMed ID: 23675414
[TBL] [Abstract][Full Text] [Related]
4. Predicting and annotating catalytic residues: an information theoretic approach.
Sterner B; Singh R; Berger B
J Comput Biol; 2007 Oct; 14(8):1058-73. PubMed ID: 17887954
[TBL] [Abstract][Full Text] [Related]
5. An improved prediction of catalytic residues in enzyme structures.
Tang YR; Sheng ZY; Chen YZ; Zhang Z
Protein Eng Des Sel; 2008 May; 21(5):295-302. PubMed ID: 18287176
[TBL] [Abstract][Full Text] [Related]
6. Sequence-based enzyme catalytic domain prediction using clustering and aggregated mutual information content.
Choi K; Kim S
J Bioinform Comput Biol; 2011 Oct; 9(5):597-611. PubMed ID: 21976378
[TBL] [Abstract][Full Text] [Related]
7. CSmetaPred: a consensus method for prediction of catalytic residues.
Choudhary P; Kumar S; Bachhawat AK; Pandit SB
BMC Bioinformatics; 2017 Dec; 18(1):583. PubMed ID: 29273005
[TBL] [Abstract][Full Text] [Related]
8. A global analysis of function and conservation of catalytic residues in enzymes.
Ribeiro AJM; Tyzack JD; Borkakoti N; Holliday GL; Thornton JM
J Biol Chem; 2020 Jan; 295(2):314-324. PubMed ID: 31796628
[TBL] [Abstract][Full Text] [Related]
9. Functional Sites Induce Long-Range Evolutionary Constraints in Enzymes.
Jack BR; Meyer AG; Echave J; Wilke CO
PLoS Biol; 2016 May; 14(5):e1002452. PubMed ID: 27138088
[TBL] [Abstract][Full Text] [Related]
10. An assessment of catalytic residue 3D ensembles for the prediction of enzyme function.
Žváček C; Friedrichs G; Heizinger L; Merkl R
BMC Bioinformatics; 2015 Nov; 16():359. PubMed ID: 26538500
[TBL] [Abstract][Full Text] [Related]
11. Identification of catalytic residues from protein structure using support vector machine with sequence and structural features.
Pugalenthi G; Kumar KK; Suganthan PN; Gangal R
Biochem Biophys Res Commun; 2008 Mar; 367(3):630-4. PubMed ID: 18206645
[TBL] [Abstract][Full Text] [Related]
12. Prediction of catalytic residues in enzymes based on known tertiary structure, stability profile, and sequence conservation.
Ota M; Kinoshita K; Nishikawa K
J Mol Biol; 2003 Apr; 327(5):1053-64. PubMed ID: 12662930
[TBL] [Abstract][Full Text] [Related]
13. Protein structure based prediction of catalytic residues.
Fajardo JE; Fiser A
BMC Bioinformatics; 2013 Feb; 14():63. PubMed ID: 23433045
[TBL] [Abstract][Full Text] [Related]
14. Enhanced performance in prediction of protein active sites with THEMATICS and support vector machines.
Tong W; Williams RJ; Wei Y; Murga LF; Ko J; Ondrechen MJ
Protein Sci; 2008 Feb; 17(2):333-41. PubMed ID: 18096640
[TBL] [Abstract][Full Text] [Related]
15. Analysis of catalytic residues in enzyme active sites.
Bartlett GJ; Porter CT; Borkakoti N; Thornton JM
J Mol Biol; 2002 Nov; 324(1):105-21. PubMed ID: 12421562
[TBL] [Abstract][Full Text] [Related]
16. PINGU: PredIction of eNzyme catalytic residues usinG seqUence information.
Pai PP; Ranjani SS; Mondal S
PLoS One; 2015; 10(8):e0135122. PubMed ID: 26261982
[TBL] [Abstract][Full Text] [Related]
17. The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data.
Porter CT; Bartlett GJ; Thornton JM
Nucleic Acids Res; 2004 Jan; 32(Database issue):D129-33. PubMed ID: 14681376
[TBL] [Abstract][Full Text] [Related]
18. CoeViz: a web-based tool for coevolution analysis of protein residues.
Baker FN; Porollo A
BMC Bioinformatics; 2016 Mar; 17():119. PubMed ID: 26956673
[TBL] [Abstract][Full Text] [Related]
19. Prediction of catalytic residues using Support Vector Machine with selected protein sequence and structural properties.
Petrova NV; Wu CH
BMC Bioinformatics; 2006 Jun; 7():312. PubMed ID: 16790052
[TBL] [Abstract][Full Text] [Related]
20. Combining structure and sequence information allows automated prediction of substrate specificities within enzyme families.
Röttig M; Rausch C; Kohlbacher O
PLoS Comput Biol; 2010 Jan; 6(1):e1000636. PubMed ID: 20072606
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
