BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

294 related articles for article (PubMed ID: 21082432)

  • 21. A spectral clustering approach to MS/MS identification of post-translational modifications.
    Falkner JA; Falkner JW; Yocum AK; Andrews PC
    J Proteome Res; 2008 Nov; 7(11):4614-22. PubMed ID: 18800783
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Computational approaches to peptide identification via tandem MS.
    Hubbard SJ
    Methods Mol Biol; 2010; 604():23-42. PubMed ID: 20013362
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Charger: combination of signal processing and statistical learning algorithms for precursor charge-state determination from electron-transfer dissociation spectra.
    Sadygov RG; Hao Z; Huhmer AF
    Anal Chem; 2008 Jan; 80(2):376-86. PubMed ID: 18081262
    [TBL] [Abstract][Full Text] [Related]  

  • 24. PepSOM: an algorithm for peptide identification by tandem mass spectrometry based on SOM.
    Ning K; Ng HK; Leong HW
    Genome Inform; 2006; 17(2):194-205. PubMed ID: 17503392
    [TBL] [Abstract][Full Text] [Related]  

  • 25. MASPIC: intensity-based tandem mass spectrometry scoring scheme that improves peptide identification at high confidence.
    Narasimhan C; Tabb DL; Verberkmoes NC; Thompson MR; Hettich RL; Uberbacher EC
    Anal Chem; 2005 Dec; 77(23):7581-93. PubMed ID: 16316165
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Speeding up tandem mass spectrometry database search: metric embeddings and fast near neighbor search.
    Dutta D; Chen T
    Bioinformatics; 2007 Mar; 23(5):612-8. PubMed ID: 17237061
    [TBL] [Abstract][Full Text] [Related]  

  • 27. A MS data search method for improved 15N-labeled protein identification.
    Zhang Y; Webhofer C; Reckow S; Filiou MD; Maccarrone G; Turck CW
    Proteomics; 2009 Sep; 9(17):4265-70. PubMed ID: 19722194
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Spectral library searching for peptide identification via tandem MS.
    Lam H; Aebersold R
    Methods Mol Biol; 2010; 604():95-103. PubMed ID: 20013366
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Statistical models for protein validation using tandem mass spectral data and protein amino acid sequence databases.
    Sadygov RG; Liu H; Yates JR
    Anal Chem; 2004 Mar; 76(6):1664-71. PubMed ID: 15018565
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Integrated approach for manual evaluation of peptides identified by searching protein sequence databases with tandem mass spectra.
    Chen Y; Kwon SW; Kim SC; Zhao Y
    J Proteome Res; 2005; 4(3):998-1005. PubMed ID: 15952748
    [TBL] [Abstract][Full Text] [Related]  

  • 31. High-throughput identification of proteins and unanticipated sequence modifications using a mass-based alignment algorithm for MS/MS de novo sequencing results.
    Searle BC; Dasari S; Turner M; Reddy AP; Choi D; Wilmarth PA; McCormack AL; David LL; Nagalla SR
    Anal Chem; 2004 Apr; 76(8):2220-30. PubMed ID: 15080731
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Spectral clustering in peptidomics studies allows homology searching and modification profiling: HomClus, a versatile tool.
    Menschaert G; Hayakawa E; Schoofs L; Van Criekinge W; Baggerman G
    J Proteome Res; 2012 May; 11(5):2774-85. PubMed ID: 22409323
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures.
    Li GZ; Vissers JP; Silva JC; Golick D; Gorenstein MV; Geromanos SJ
    Proteomics; 2009 Mar; 9(6):1696-719. PubMed ID: 19294629
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Evaluating preparative isoelectric focusing of complex peptide mixtures for tandem mass spectrometry-based proteomics: a case study in profiling chromatin-enriched subcellular fractions in Saccharomyces cerevisiae.
    Xie H; Bandhakavi S; Griffin TJ
    Anal Chem; 2005 May; 77(10):3198-207. PubMed ID: 15889909
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Evaluation of several MS/MS search algorithms for analysis of spectra derived from electron transfer dissociation experiments.
    Kandasamy K; Pandey A; Molina H
    Anal Chem; 2009 Sep; 81(17):7170-80. PubMed ID: 19639959
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Cloud parallel processing of tandem mass spectrometry based proteomics data.
    Mohammed Y; Mostovenko E; Henneman AA; Marissen RJ; Deelder AM; Palmblad M
    J Proteome Res; 2012 Oct; 11(10):5101-8. PubMed ID: 22916831
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Understanding the improved sensitivity of spectral library searching over sequence database searching in proteomics data analysis.
    Zhang X; Li Y; Shao W; Lam H
    Proteomics; 2011 Mar; 11(6):1075-85. PubMed ID: 21298786
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Maximizing the sensitivity and reliability of peptide identification in large-scale proteomic experiments by harnessing multiple search engines.
    Yu W; Taylor JA; Davis MT; Bonilla LE; Lee KA; Auger PL; Farnsworth CC; Welcher AA; Patterson SD
    Proteomics; 2010 Mar; 10(6):1172-89. PubMed ID: 20101609
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Development and validation of a spectral library searching method for peptide identification from MS/MS.
    Lam H; Deutsch EW; Eddes JS; Eng JK; King N; Stein SE; Aebersold R
    Proteomics; 2007 Mar; 7(5):655-67. PubMed ID: 17295354
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Database interrogation algorithms for identification of proteins in proteomic separations.
    Palagi PM; Lisacek F; Appel RD
    Methods Mol Biol; 2009; 519():515-31. PubMed ID: 19381607
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 15.