455 related articles for article (PubMed ID: 21082435)
1. Software pipeline and data analysis for MS/MS proteomics: the trans-proteomic pipeline.
Keller A; Shteynberg D
Methods Mol Biol; 2011; 694():169-89. PubMed ID: 21082435
[TBL] [Abstract][Full Text] [Related]
2. Quantitative proteomics using uniform (15)N-labeling, MASCOT, and the trans-proteomic pipeline.
Palmblad M; Bindschedler LV; Cramer R
Proteomics; 2007 Oct; 7(19):3462-9. PubMed ID: 17726679
[TBL] [Abstract][Full Text] [Related]
3. Development and validation of a spectral library searching method for peptide identification from MS/MS.
Lam H; Deutsch EW; Eddes JS; Eng JK; King N; Stein SE; Aebersold R
Proteomics; 2007 Mar; 7(5):655-67. PubMed ID: 17295354
[TBL] [Abstract][Full Text] [Related]
4. Global quantitative proteomic profiling through 18O-labeling in combination with MS/MS spectra analysis.
White CA; Oey N; Emili A
J Proteome Res; 2009 Jul; 8(7):3653-65. PubMed ID: 19400582
[TBL] [Abstract][Full Text] [Related]
5. Trans-proteomic pipeline: a pipeline for proteomic analysis.
Pedrioli PG
Methods Mol Biol; 2010; 604():213-38. PubMed ID: 20013374
[TBL] [Abstract][Full Text] [Related]
6. Automated generic analysis tools for protein quantitation using stable isotope labeling.
Hsu WL; Sung TY
Methods Mol Biol; 2010; 604():257-72. PubMed ID: 20013376
[TBL] [Abstract][Full Text] [Related]
7. MSQuant, an open source platform for mass spectrometry-based quantitative proteomics.
Mortensen P; Gouw JW; Olsen JV; Ong SE; Rigbolt KT; Bunkenborg J; Cox J; Foster LJ; Heck AJ; Blagoev B; Andersen JS; Mann M
J Proteome Res; 2010 Jan; 9(1):393-403. PubMed ID: 19888749
[TBL] [Abstract][Full Text] [Related]
8. ProteinQuant Suite: a bundle of automated software tools for label-free quantitative proteomics.
Mann B; Madera M; Sheng Q; Tang H; Mechref Y; Novotny MV
Rapid Commun Mass Spectrom; 2008 Dec; 22(23):3823-34. PubMed ID: 18985620
[TBL] [Abstract][Full Text] [Related]
9. Compid: a new software tool to integrate and compare MS/MS based protein identification results from Mascot and Paragon.
Lietzén N; Natri L; Nevalainen OS; Salmi J; Nyman TA
J Proteome Res; 2010 Dec; 9(12):6795-800. PubMed ID: 20973569
[TBL] [Abstract][Full Text] [Related]
10. Added value for tandem mass spectrometry shotgun proteomics data validation through isoelectric focusing of peptides.
Heller M; Ye M; Michel PE; Morier P; Stalder D; Jünger MA; Aebersold R; Reymond F; Rossier JS
J Proteome Res; 2005; 4(6):2273-82. PubMed ID: 16335976
[TBL] [Abstract][Full Text] [Related]
11. VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.
Matthiesen R; Trelle MB; Højrup P; Bunkenborg J; Jensen ON
J Proteome Res; 2005; 4(6):2338-47. PubMed ID: 16335983
[TBL] [Abstract][Full Text] [Related]
12. CHOMPER: a bioinformatic tool for rapid validation of tandem mass spectrometry search results associated with high-throughput proteomic strategies.
Eddes JS; Kapp EA; Frecklington DF; Connolly LM; Layton MJ; Moritz RL; Simpson RJ
Proteomics; 2002 Sep; 2(9):1097-103. PubMed ID: 12362328
[TBL] [Abstract][Full Text] [Related]
13. Maximizing the sensitivity and reliability of peptide identification in large-scale proteomic experiments by harnessing multiple search engines.
Yu W; Taylor JA; Davis MT; Bonilla LE; Lee KA; Auger PL; Farnsworth CC; Welcher AA; Patterson SD
Proteomics; 2010 Mar; 10(6):1172-89. PubMed ID: 20101609
[TBL] [Abstract][Full Text] [Related]
14. OpenMS and TOPP: open source software for LC-MS data analysis.
Reinert K; Kohlbacher O
Methods Mol Biol; 2010; 604():201-11. PubMed ID: 20013373
[TBL] [Abstract][Full Text] [Related]
15. An iterative strategy for precursor ion selection for LC-MS/MS based shotgun proteomics.
Zerck A; Nordhoff E; Resemann A; Mirgorodskaya E; Suckau D; Reinert K; Lehrach H; Gobom J
J Proteome Res; 2009 Jul; 8(7):3239-51. PubMed ID: 19402737
[TBL] [Abstract][Full Text] [Related]
16. MapQuant: open-source software for large-scale protein quantification.
Leptos KC; Sarracino DA; Jaffe JD; Krastins B; Church GM
Proteomics; 2006 Mar; 6(6):1770-82. PubMed ID: 16470651
[TBL] [Abstract][Full Text] [Related]
17. Identification and quantification of protein carbonylation using light and heavy isotope labeled Girard's P reagent.
Mirzaei H; Regnier F
J Chromatogr A; 2006 Nov; 1134(1-2):122-33. PubMed ID: 16996067
[TBL] [Abstract][Full Text] [Related]
18. GAPP: a fully automated software for the confident identification of human peptides from tandem mass spectra.
Shadforth I; Xu W; Crowther D; Bessant C
J Proteome Res; 2006 Oct; 5(10):2849-52. PubMed ID: 17022656
[TBL] [Abstract][Full Text] [Related]
19. TOPPView: an open-source viewer for mass spectrometry data.
Sturm M; Kohlbacher O
J Proteome Res; 2009 Jul; 8(7):3760-3. PubMed ID: 19425593
[TBL] [Abstract][Full Text] [Related]
20. OpenMS and TOPP: open source software for LC-MS data analysis.
Bertsch A; Gröpl C; Reinert K; Kohlbacher O
Methods Mol Biol; 2011; 696():353-67. PubMed ID: 21063960
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
