These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

265 related articles for article (PubMed ID: 21088024)

  • 21. RNAProfile: an algorithm for finding conserved secondary structure motifs in unaligned RNA sequences.
    Pavesi G; Mauri G; Stefani M; Pesole G
    Nucleic Acids Res; 2004; 32(10):3258-69. PubMed ID: 15199174
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Pairwise RNA secondary structure alignment with conserved stem pattern.
    Chiu JK; Chen YP
    Bioinformatics; 2015 Dec; 31(24):3914-21. PubMed ID: 26275897
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Predicting RNA structure using mutual information.
    Freyhult E; Moulton V; Gardner P
    Appl Bioinformatics; 2005; 4(1):53-9. PubMed ID: 16000013
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Structural alignment of RNA with triple helix structure.
    Wong TK; Yiu SM
    J Comput Biol; 2012 Apr; 19(4):365-78. PubMed ID: 22468707
    [TBL] [Abstract][Full Text] [Related]  

  • 25. StructMiner: a tool for alignment and detection of conserved secondary structure.
    Yang Q; Blanchette M
    Genome Inform; 2004; 15(2):102-11. PubMed ID: 15706496
    [TBL] [Abstract][Full Text] [Related]  

  • 26. StatAlign 2.0: combining statistical alignment with RNA secondary structure prediction.
    Arunapuram P; Edvardsson I; Golden M; Anderson JW; Novák A; Sükösd Z; Hein J
    Bioinformatics; 2013 Mar; 29(5):654-5. PubMed ID: 23335014
    [TBL] [Abstract][Full Text] [Related]  

  • 27. CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score.
    Hamada M; Sato K; Kiryu H; Mituyama T; Asai K
    Bioinformatics; 2009 Dec; 25(24):3236-43. PubMed ID: 19808876
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Murlet: a practical multiple alignment tool for structural RNA sequences.
    Kiryu H; Tabei Y; Kin T; Asai K
    Bioinformatics; 2007 Jul; 23(13):1588-98. PubMed ID: 17459961
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures.
    Saito Y; Sato K; Sakakibara Y
    BMC Bioinformatics; 2011 Feb; 12 Suppl 1(Suppl 1):S48. PubMed ID: 21342580
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Annotating non-coding RNAs with Rfam.
    Griffiths-Jones S
    Curr Protoc Bioinformatics; 2005 Apr; Chapter 12():12.5.1-12.5.12. PubMed ID: 18428745
    [TBL] [Abstract][Full Text] [Related]  

  • 31. TurboKnot: rapid prediction of conserved RNA secondary structures including pseudoknots.
    Seetin MG; Mathews DH
    Bioinformatics; 2012 Mar; 28(6):792-8. PubMed ID: 22285566
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%.
    Havgaard JH; Lyngsø RB; Stormo GD; Gorodkin J
    Bioinformatics; 2005 May; 21(9):1815-24. PubMed ID: 15657094
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Can Clustal-style progressive pairwise alignment of multiple sequences be used in RNA secondary structure prediction?
    Bellamy-Royds AB; Turcotte M
    BMC Bioinformatics; 2007 Jun; 8():190. PubMed ID: 17559658
    [TBL] [Abstract][Full Text] [Related]  

  • 34. A search for H/ACA snoRNAs in yeast using MFE secondary structure prediction.
    Edvardsson S; Gardner PP; Poole AM; Hendy MD; Penny D; Moulton V
    Bioinformatics; 2003 May; 19(7):865-73. PubMed ID: 12724297
    [TBL] [Abstract][Full Text] [Related]  

  • 35. DAFS: simultaneous aligning and folding of RNA sequences via dual decomposition.
    Sato K; Kato Y; Akutsu T; Asai K; Sakakibara Y
    Bioinformatics; 2012 Dec; 28(24):3218-24. PubMed ID: 23060618
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Predicting a set of minimal free energy RNA secondary structures common to two sequences.
    Mathews DH
    Bioinformatics; 2005 May; 21(10):2246-53. PubMed ID: 15731207
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
    Matsui H; Sato K; Sakakibara Y
    Proc IEEE Comput Syst Bioinform Conf; 2004; ():290-9. PubMed ID: 16448022
    [TBL] [Abstract][Full Text] [Related]  

  • 38. RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data.
    Washietl S; Findeiss S; Müller SA; Kalkhof S; von Bergen M; Hofacker IL; Stadler PF; Goldman N
    RNA; 2011 Apr; 17(4):578-94. PubMed ID: 21357752
    [TBL] [Abstract][Full Text] [Related]  

  • 39. MAGNOLIA: multiple alignment of protein-coding and structural RNA sequences.
    Fontaine A; de Monte A; Touzet H
    Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W14-8. PubMed ID: 18515348
    [TBL] [Abstract][Full Text] [Related]  

  • 40. SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments.
    Tabei Y; Tsuda K; Kin T; Asai K
    Bioinformatics; 2006 Jul; 22(14):1723-9. PubMed ID: 16690634
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 14.