172 related articles for article (PubMed ID: 21121696)
1. Disruption and formation of surface salt bridges are coupled to DNA binding by the integration host factor: a computational analysis.
Ma L; Sundlass NK; Raines RT; Cui Q
Biochemistry; 2011 Jan; 50(2):266-75. PubMed ID: 21121696
[TBL] [Abstract][Full Text] [Related]
2. Specific and non-specific interactions of integration host factor with DNA: thermodynamic evidence for disruption of multiple IHF surface salt-bridges coupled to DNA binding.
Holbrook JA; Tsodikov OV; Saecker RM; Record MT
J Mol Biol; 2001 Jul; 310(2):379-401. PubMed ID: 11428896
[TBL] [Abstract][Full Text] [Related]
3. New insights into the transition pathway from nonspecific to specific complex of DNA with Escherichia coli integration host factor.
Vivas P; Kuznetsov SV; Ansari A
J Phys Chem B; 2008 May; 112(19):5997-6007. PubMed ID: 18461910
[TBL] [Abstract][Full Text] [Related]
4. Formation of a wrapped DNA-protein interface: experimental characterization and analysis of the large contributions of ions and water to the thermodynamics of binding IHF to H' DNA.
Vander Meulen KA; Saecker RM; Record MT
J Mol Biol; 2008 Mar; 377(1):9-27. PubMed ID: 18237740
[TBL] [Abstract][Full Text] [Related]
5. Protein surface salt bridges and paths for DNA wrapping.
Saecker RM; Record MT
Curr Opin Struct Biol; 2002 Jun; 12(3):311-9. PubMed ID: 12127449
[TBL] [Abstract][Full Text] [Related]
6. Structural and evolutionary analyses reveal determinants of DNA binding specificities of nucleoid-associated proteins HU and IHF.
Dey D; Nagaraja V; Ramakumar S
Mol Phylogenet Evol; 2017 Feb; 107():356-366. PubMed ID: 27894997
[TBL] [Abstract][Full Text] [Related]
7. Investigation of Binding Affinity Between Prokaryotic Proteins (AHU-IHF) and DNAs: Steered Molecular Dynamics Approach.
Nguyen H; Pham T; Nguyen HL; Phan T
Appl Biochem Biotechnol; 2018 Dec; 186(4):834-846. PubMed ID: 29740800
[TBL] [Abstract][Full Text] [Related]
8. Direct observation of DNA bending/unbending kinetics in complex with DNA-bending protein IHF.
Kuznetsov SV; Sugimura S; Vivas P; Crothers DM; Ansari A
Proc Natl Acad Sci U S A; 2006 Dec; 103(49):18515-20. PubMed ID: 17124171
[TBL] [Abstract][Full Text] [Related]
9. Concerted binding and bending of DNA by Escherichia coli integration host factor.
Dhavan GM; Crothers DM; Chance MR; Brenowitz M
J Mol Biol; 2002 Feb; 315(5):1027-37. PubMed ID: 11827473
[TBL] [Abstract][Full Text] [Related]
10. Pressure dissociation of integration host factor-DNA complexes reveals flexibility-dependent structural variation at the protein-DNA interface.
Senear DF; Tretyachenko-Ladokhina V; Opel ML; Aeling KA; Hatfield GW; Franklin LM; Darlington RC; Alexander Ross JB
Nucleic Acids Res; 2007; 35(6):1761-72. PubMed ID: 17324943
[TBL] [Abstract][Full Text] [Related]
11. Understanding antibody-antigen associations by molecular dynamics simulations: detection of important intra- and inter-molecular salt bridges.
Sinha N; Li Y; Lipschultz CA; Smith-Gill SJ
Cell Biochem Biophys; 2007; 47(3):361-75. PubMed ID: 17652781
[TBL] [Abstract][Full Text] [Related]
12. Molecular Insight into the Structural Dynamics of Holliday Junctions Modulated by Integration Host Factor.
Islam F; Mishra PP
J Phys Chem B; 2024 Jun; 128(23):5642-5657. PubMed ID: 38812070
[TBL] [Abstract][Full Text] [Related]
13. Integration host factor: putting a twist on protein-DNA recognition.
Lynch TW; Read EK; Mattis AN; Gardner JF; Rice PA
J Mol Biol; 2003 Jul; 330(3):493-502. PubMed ID: 12842466
[TBL] [Abstract][Full Text] [Related]
14. Regulation of Bacterial DNA Packaging in Early Stationary Phase by Competitive DNA Binding of Dps and IHF.
Lee SY; Lim CJ; Dröge P; Yan J
Sci Rep; 2015 Dec; 5():18146. PubMed ID: 26657062
[TBL] [Abstract][Full Text] [Related]
15. Escherichia coli prereplication complex assembly is regulated by dynamic interplay among Fis, IHF and DnaA.
Ryan VT; Grimwade JE; Camara JE; Crooke E; Leonard AC
Mol Microbiol; 2004 Mar; 51(5):1347-59. PubMed ID: 14982629
[TBL] [Abstract][Full Text] [Related]
16. Vital insights into prokaryotic genome compaction by nucleoid-associated protein (NAP) and illustration of DNA flexure angles at single-molecule resolution.
Purkait D; Bandyopadhyay D; Mishra PP
Int J Biol Macromol; 2021 Feb; 171():100-111. PubMed ID: 33418050
[TBL] [Abstract][Full Text] [Related]
17. Molecular beacon-equilibrium cyclization detection of DNA-protein complexes.
Vitko J; Rujan I; Androga L; Mukerji I; Bolton PH
Biophys J; 2007 Nov; 93(9):3210-7. PubMed ID: 17631534
[TBL] [Abstract][Full Text] [Related]
18. Defining the Functionally Important Domain and Amino Acid Residues in Mycobacterium tuberculosis Integration Host Factor for Genome Stability, DNA Binding, and Integrative Recombination.
Sharadamma N; Harshavardhana Y; Muniyappa K
J Bacteriol; 2017 Oct; 199(19):. PubMed ID: 28696279
[TBL] [Abstract][Full Text] [Related]
19. Physical organization of DNA by multiple non-specific DNA-binding modes of integration host factor (IHF).
Lin J; Chen H; Dröge P; Yan J
PLoS One; 2012; 7(11):e49885. PubMed ID: 23166787
[TBL] [Abstract][Full Text] [Related]
20. Near-atomic structural model for bacterial DNA replication initiation complex and its functional insights.
Shimizu M; Noguchi Y; Sakiyama Y; Kawakami H; Katayama T; Takada S
Proc Natl Acad Sci U S A; 2016 Dec; 113(50):E8021-E8030. PubMed ID: 27911788
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
