These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

148 related articles for article (PubMed ID: 21130100)

  • 1. Amino acid pair- and triplet-wise groupings in the interior of α-helical segments in proteins.
    de Sousa MM; Munteanu CR; Pazos A; Fonseca NA; Camacho R; Magalhães AL
    J Theor Biol; 2011 Feb; 271(1):136-44. PubMed ID: 21130100
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Amino acid pairing at the N- and C-termini of helical segments in proteins.
    Fonseca NA; Camacho R; Magalhães AL
    Proteins; 2008 Jan; 70(1):188-96. PubMed ID: 17654550
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Use of amino acid environment-dependent substitution tables and conformational propensities in structure prediction from aligned sequences of homologous proteins. II. Secondary structures.
    Wako H; Blundell TL
    J Mol Biol; 1994 May; 238(5):693-708. PubMed ID: 8182744
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Propensities of Amino Acid Pairings in Secondary Structure of Globular Proteins.
    Nacar C
    Protein J; 2020 Feb; 39(1):21-32. PubMed ID: 31933010
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Amino acid propensities for secondary structures are influenced by the protein structural class.
    Costantini S; Colonna G; Facchiano AM
    Biochem Biophys Res Commun; 2006 Apr; 342(2):441-51. PubMed ID: 16487481
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Amino acid propensities are position-dependent throughout the length of alpha-helices.
    Engel DE; DeGrado WF
    J Mol Biol; 2004 Apr; 337(5):1195-205. PubMed ID: 15046987
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Dependence of α-helical and β-sheet amino acid propensities on the overall protein fold type.
    Fujiwara K; Toda H; Ikeguchi M
    BMC Struct Biol; 2012 Aug; 12():18. PubMed ID: 22857400
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The use of amino acid patterns of classified helices and strands in secondary structure prediction.
    Zhu ZY; Blundell TL
    J Mol Biol; 1996 Jul; 260(2):261-76. PubMed ID: 8764405
    [TBL] [Abstract][Full Text] [Related]  

  • 9. On residues in the disallowed region of the Ramachandran map.
    Pal D; Chakrabarti P
    Biopolymers; 2002 Mar; 63(3):195-206. PubMed ID: 11787007
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Intrinsic secondary structure propensities of the amino acids, using statistical phi-psi matrices: comparison with experimental scales.
    Muñoz V; Serrano L
    Proteins; 1994 Dec; 20(4):301-11. PubMed ID: 7731949
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Amino acid propensities for secondary structures and its variation across protein structures using exhaustive PDB data.
    Sen C; Logashree V; Makde RD; Ghosh B
    Comput Biol Chem; 2024 Jun; 110():108083. PubMed ID: 38691894
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Structural and sequence characteristics of long alpha helices in globular proteins.
    Kumar S; Bansal M
    Biophys J; 1996 Sep; 71(3):1574-86. PubMed ID: 8874031
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Amino acid content of beta strands and alpha helices depends on their flanking secondary structure elements.
    Khrustalev VV; Khrustaleva TA; Poboinev VV
    Biosystems; 2018 Jun; 168():45-54. PubMed ID: 29742459
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Deciphering the structural code for proteins: helical propensities in domain classes and statistical multiresidue information in alpha-helices.
    Negrete JA; Viñuales Y; Palau J
    Protein Sci; 1998 Jun; 7(6):1368-79. PubMed ID: 9655341
    [TBL] [Abstract][Full Text] [Related]  

  • 15. NdPASA: a novel pairwise protein sequence alignment algorithm that incorporates neighbor-dependent amino acid propensities.
    Wang J; Feng JA
    Proteins; 2005 Feb; 58(3):628-37. PubMed ID: 15616964
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Prediction of alpha-helices in proteins with the hydrophobic strip-of-helix template and distributions of other amino acids around the hydrophobic strip.
    Vazquez SR; Kuo DZ; Salomon M; Hardy L; Lew RA; Humphreys RE
    Arch Biochem Biophys; 1993 Sep; 305(2):448-53. PubMed ID: 8373182
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The occurrence of C--H...O hydrogen bonds in alpha-helices and helix termini in globular proteins.
    Manikandan K; Ramakumar S
    Proteins; 2004 Sep; 56(4):768-81. PubMed ID: 15281129
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Protein design with L- and D-alpha-amino acid structures as the alphabet.
    Durani S
    Acc Chem Res; 2008 Oct; 41(10):1301-8. PubMed ID: 18642934
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Statistical analysis of amino acid patterns in transmembrane helices: the GxxxG motif occurs frequently and in association with beta-branched residues at neighboring positions.
    Senes A; Gerstein M; Engelman DM
    J Mol Biol; 2000 Feb; 296(3):921-36. PubMed ID: 10677292
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Exploring the sequence patterns in the alpha-helices of proteins.
    Wang J; Feng JA
    Protein Eng; 2003 Nov; 16(11):799-807. PubMed ID: 14631069
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.