111 related articles for article (PubMed ID: 21143778)
21. Systems biology approach identifies key regulators and the interplay between miRNAs and transcription factors for pathological cardiac hypertrophy.
Recamonde-Mendoza M; Werhli AV; Biolo A
Gene; 2019 May; 698():157-169. PubMed ID: 30844478
[TBL] [Abstract][Full Text] [Related]
22. SMARTS: reconstructing disease response networks from multiple individuals using time series gene expression data.
Wise A; Bar-Joseph Z
Bioinformatics; 2015 Apr; 31(8):1250-7. PubMed ID: 25480376
[TBL] [Abstract][Full Text] [Related]
23. Controllability analysis of transcriptional regulatory networks reveals circular control patterns among transcription factors.
Ă–sterlund T; Bordel S; Nielsen J
Integr Biol (Camb); 2015 May; 7(5):560-8. PubMed ID: 25855217
[TBL] [Abstract][Full Text] [Related]
24. Inferring dynamic gene regulatory networks in cardiac differentiation through the integration of multi-dimensional data.
Gong W; Koyano-Nakagawa N; Li T; Garry DJ
BMC Bioinformatics; 2015 Mar; 16():74. PubMed ID: 25887857
[TBL] [Abstract][Full Text] [Related]
25. A novel motif-discovery algorithm to identify co-regulatory motifs in large transcription factor and microRNA co-regulatory networks in human.
Liang C; Li Y; Luo J; Zhang Z
Bioinformatics; 2015 Jul; 31(14):2348-55. PubMed ID: 25788622
[TBL] [Abstract][Full Text] [Related]
26. Circuitry and dynamics of human transcription factor regulatory networks.
Neph S; Stergachis AB; Reynolds A; Sandstrom R; Borenstein E; Stamatoyannopoulos JA
Cell; 2012 Sep; 150(6):1274-86. PubMed ID: 22959076
[TBL] [Abstract][Full Text] [Related]
27. Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method.
Dorier J; Crespo I; Niknejad A; Liechti R; Ebeling M; Xenarios I
BMC Bioinformatics; 2016 Oct; 17(1):410. PubMed ID: 27716031
[TBL] [Abstract][Full Text] [Related]
28. SCGRNs: Novel supervised inference of single-cell gene regulatory networks of complex diseases.
Turki T; Taguchi YH
Comput Biol Med; 2020 Mar; 118():103656. PubMed ID: 32174324
[TBL] [Abstract][Full Text] [Related]
29. A gene network simulator to assess reverse engineering algorithms.
Di Camillo B; Toffolo G; Cobelli C
Ann N Y Acad Sci; 2009 Mar; 1158():125-42. PubMed ID: 19348638
[TBL] [Abstract][Full Text] [Related]
30. ModEx: A text mining system for extracting mode of regulation of transcription factor-gene regulatory interaction.
Farahmand S; Riley T; Zarringhalam K
J Biomed Inform; 2020 Feb; 102():103353. PubMed ID: 31857203
[TBL] [Abstract][Full Text] [Related]
31. TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach.
Zoppoli P; Morganella S; Ceccarelli M
BMC Bioinformatics; 2010 Mar; 11():154. PubMed ID: 20338053
[TBL] [Abstract][Full Text] [Related]
32. Construction and analysis of dynamic transcription factor regulatory networks in the progression of glioma.
Li Y; Shao T; Jiang C; Bai J; Wang Z; Zhang J; Zhang L; Zhao Z; Xu J; Li X
Sci Rep; 2015 Nov; 5():15953. PubMed ID: 26526635
[TBL] [Abstract][Full Text] [Related]
33. CMIP: a software package capable of reconstructing genome-wide regulatory networks using gene expression data.
Zheng G; Xu Y; Zhang X; Liu ZP; Wang Z; Chen L; Zhu XG
BMC Bioinformatics; 2016 Dec; 17(Suppl 17):535. PubMed ID: 28155637
[TBL] [Abstract][Full Text] [Related]
34. Local network component analysis for quantifying transcription factor activities.
Shi Q; Zhang C; Guo W; Zeng T; Lu L; Jiang Z; Wang Z; Liu J; Chen L
Methods; 2017 Jul; 124():25-35. PubMed ID: 28710010
[TBL] [Abstract][Full Text] [Related]
35. ReNE: a cytoscape plugin for regulatory network enhancement.
Politano G; Benso A; Savino A; Di Carlo S
PLoS One; 2014; 9(12):e115585. PubMed ID: 25541727
[TBL] [Abstract][Full Text] [Related]
36. Transcription factor regulatory network for early lung immune response to tuberculosis in mice.
Yaqubi M; Mohammadnia A; Fallahi H
Mol Med Rep; 2015 Aug; 12(2):2865-71. PubMed ID: 25955085
[TBL] [Abstract][Full Text] [Related]
37. Comprehensive Analysis of Novel lncRNA-TF Regulatory Cross Talks and Identification of Core lncRNA-TF Feedback Loops in Sarcoma.
Wang K; Ye X; Yang C; Chen G; Yao N; Kang Z; Shi W
DNA Cell Biol; 2020 Sep; 39(9):1558-1572. PubMed ID: 32845706
[TBL] [Abstract][Full Text] [Related]
38. PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants.
Chow CN; Zheng HQ; Wu NY; Chien CH; Huang HD; Lee TY; Chiang-Hsieh YF; Hou PF; Yang TY; Chang WC
Nucleic Acids Res; 2016 Jan; 44(D1):D1154-60. PubMed ID: 26476450
[TBL] [Abstract][Full Text] [Related]
39. Network inference algorithms elucidate Nrf2 regulation of mouse lung oxidative stress.
Taylor RC; Acquaah-Mensah G; Singhal M; Malhotra D; Biswal S
PLoS Comput Biol; 2008 Aug; 4(8):e1000166. PubMed ID: 18769717
[TBL] [Abstract][Full Text] [Related]
40. Reconstruction of temporal activity of microRNAs from gene expression data in breast cancer cell line.
Jayavelu ND; Bar N
BMC Genomics; 2015 Dec; 16():1077. PubMed ID: 26763900
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]