1771 related articles for article (PubMed ID: 21149342)
1. Scaffolding pre-assembled contigs using SSPACE.
Boetzer M; Henkel CV; Jansen HJ; Butler D; Pirovano W
Bioinformatics; 2011 Feb; 27(4):578-9. PubMed ID: 21149342
[TBL] [Abstract][Full Text] [Related]
2. gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output.
Kammonen JI; Smolander OP; Paulin L; Pereira PAB; Laine P; Koskinen P; Jernvall J; Auvinen P
PLoS One; 2019; 14(9):e0216885. PubMed ID: 31498807
[TBL] [Abstract][Full Text] [Related]
3. ELOPER: elongation of paired-end reads as a pre-processing tool for improved de novo genome assembly.
Silver DH; Ben-Elazar S; Bogoslavsky A; Yanai I
Bioinformatics; 2013 Jun; 29(11):1455-7. PubMed ID: 23603334
[TBL] [Abstract][Full Text] [Related]
4. Multi-CAR: a tool of contig scaffolding using multiple references.
Chen KT; Chen CJ; Shen HT; Liu CL; Huang SH; Lu CL
BMC Bioinformatics; 2016 Dec; 17(Suppl 17):469. PubMed ID: 28155633
[TBL] [Abstract][Full Text] [Related]
5. OMGS: Optical Map-Based Genome Scaffolding.
Pan W; Jiang T; Lonardi S
J Comput Biol; 2020 Apr; 27(4):519-533. PubMed ID: 31794680
[TBL] [Abstract][Full Text] [Related]
6. GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
Gritsenko AA; Nijkamp JF; Reinders MJ; de Ridder D
Bioinformatics; 2012 Jun; 28(11):1429-37. PubMed ID: 22492642
[TBL] [Abstract][Full Text] [Related]
7. Evaluation and Validation of Assembling Corrected PacBio Long Reads for Microbial Genome Completion via Hybrid Approaches.
Lin HH; Liao YC
PLoS One; 2015; 10(12):e0144305. PubMed ID: 26641475
[TBL] [Abstract][Full Text] [Related]
8. BESST--efficient scaffolding of large fragmented assemblies.
Sahlin K; Vezzi F; Nystedt B; Lundeberg J; Arvestad L
BMC Bioinformatics; 2014 Aug; 15(1):281. PubMed ID: 25128196
[TBL] [Abstract][Full Text] [Related]
9. SOPRA: Scaffolding algorithm for paired reads via statistical optimization.
Dayarian A; Michael TP; Sengupta AM
BMC Bioinformatics; 2010 Jun; 11():345. PubMed ID: 20576136
[TBL] [Abstract][Full Text] [Related]
10. MeDuSa: a multi-draft based scaffolder.
Bosi E; Donati B; Galardini M; Brunetti S; Sagot MF; Lió P; Crescenzi P; Fani R; Fondi M
Bioinformatics; 2015 Aug; 31(15):2443-51. PubMed ID: 25810435
[TBL] [Abstract][Full Text] [Related]
11. SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information.
Boetzer M; Pirovano W
BMC Bioinformatics; 2014 Jun; 15():211. PubMed ID: 24950923
[TBL] [Abstract][Full Text] [Related]
12. GAPPadder: a sensitive approach for closing gaps on draft genomes with short sequence reads.
Chu C; Li X; Wu Y
BMC Genomics; 2019 Jun; 20(Suppl 5):426. PubMed ID: 31167639
[TBL] [Abstract][Full Text] [Related]
13. A comprehensive evaluation of assembly scaffolding tools.
Hunt M; Newbold C; Berriman M; Otto TD
Genome Biol; 2014 Mar; 15(3):R42. PubMed ID: 24581555
[TBL] [Abstract][Full Text] [Related]
14. FastEtch: A Fast Sketch-Based Assembler for Genomes.
Ghosh P; Kalyanaraman A
IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(4):1091-1106. PubMed ID: 28910776
[TBL] [Abstract][Full Text] [Related]
15. Assembly scaffolding with PE-contaminated mate-pair libraries.
Sahlin K; Chikhi R; Arvestad L
Bioinformatics; 2016 Jul; 32(13):1925-32. PubMed ID: 27153683
[TBL] [Abstract][Full Text] [Related]
16. Identifying wrong assemblies in de novo short read primary sequence assembly contigs.
Chawla V; Kumar R; Shankar R
J Biosci; 2016 Sep; 41(3):455-74. PubMed ID: 27581937
[TBL] [Abstract][Full Text] [Related]
17. SLR-superscaffolder: a de novo scaffolding tool for synthetic long reads using a top-to-bottom scheme.
Guo L; Xu M; Wang W; Gu S; Zhao X; Chen F; Wang O; Xu X; Seim I; Fan G; Deng L; Liu X
BMC Bioinformatics; 2021 Mar; 22(1):158. PubMed ID: 33765921
[TBL] [Abstract][Full Text] [Related]
18. ScaffMatch: scaffolding algorithm based on maximum weight matching.
Mandric I; Zelikovsky A
Bioinformatics; 2015 Aug; 31(16):2632-8. PubMed ID: 25890305
[TBL] [Abstract][Full Text] [Related]
19. Improved gap size estimation for scaffolding algorithms.
Sahlin K; Street N; Lundeberg J; Arvestad L
Bioinformatics; 2012 Sep; 28(17):2215-22. PubMed ID: 22923455
[TBL] [Abstract][Full Text] [Related]
20. SLIQ: simple linear inequalities for efficient contig scaffolding.
Roy RS; Chen KC; Sengupta AM; Schliep A
J Comput Biol; 2012 Oct; 19(10):1162-75. PubMed ID: 23057825
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
