187 related articles for article (PubMed ID: 21152403)
1. Anchor-based whole genome phylogeny (ABWGP): a tool for inferring evolutionary relationship among closely related microorganisms [corrected].
Vishnoi A; Roy R; Prasad HK; Bhattacharya A
PLoS One; 2010 Nov; 5(11):e14159. PubMed ID: 21152403
[TBL] [Abstract][Full Text] [Related]
2. Living Trees: High-Quality Reproducible and Reusable Construction of Bacterial Phylogenetic Trees.
Hu D; Liu B; Wang L; Reeves PR
Mol Biol Evol; 2020 Feb; 37(2):563-575. PubMed ID: 31633785
[TBL] [Abstract][Full Text] [Related]
3. Phylogeny Reconstruction with Alignment-Free Method That Corrects for Horizontal Gene Transfer.
Bromberg R; Grishin NV; Otwinowski Z
PLoS Comput Biol; 2016 Jun; 12(6):e1004985. PubMed ID: 27336403
[TBL] [Abstract][Full Text] [Related]
4. ezTree: an automated pipeline for identifying phylogenetic marker genes and inferring evolutionary relationships among uncultivated prokaryotic draft genomes.
Wu YW
BMC Genomics; 2018 Jan; 19(Suppl 1):921. PubMed ID: 29363425
[TBL] [Abstract][Full Text] [Related]
5. Next-Generation Anchor Based Phylogeny (NexABP): constructing phylogeny from next-generation sequencing data.
Roychowdhury T; Vishnoi A; Bhattacharya A
Sci Rep; 2013; 3():2634. PubMed ID: 24022334
[TBL] [Abstract][Full Text] [Related]
6. Genome trees constructed using five different approaches suggest new major bacterial clades.
Wolf YI; Rogozin IB; Grishin NV; Tatusov RL; Koonin EV
BMC Evol Biol; 2001 Oct; 1():8. PubMed ID: 11734060
[TBL] [Abstract][Full Text] [Related]
7. panX: pan-genome analysis and exploration.
Ding W; Baumdicker F; Neher RA
Nucleic Acids Res; 2018 Jan; 46(1):e5. PubMed ID: 29077859
[TBL] [Abstract][Full Text] [Related]
8. GO4genome: a prokaryotic phylogeny based on genome organization.
Merkl R; Wiezer A
J Mol Evol; 2009 May; 68(5):550-62. PubMed ID: 19436929
[TBL] [Abstract][Full Text] [Related]
9. New approach for phylogenetic tree recovery based on genome-scale metabolic networks.
Gamermann D; Montagud A; Conejero JA; Urchueguía JF; de Córdoba PF
J Comput Biol; 2014 Jul; 21(7):508-19. PubMed ID: 24611553
[TBL] [Abstract][Full Text] [Related]
10. A Guide to Phylogenomic Inference.
Patané JSL; Martins J; Setubal JC
Methods Mol Biol; 2024; 2802():267-345. PubMed ID: 38819564
[TBL] [Abstract][Full Text] [Related]
11. Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences.
Auch AF; Henz SR; Holland BR; Göker M
BMC Bioinformatics; 2006 Jul; 7():350. PubMed ID: 16854218
[TBL] [Abstract][Full Text] [Related]
12. A phylogenomic analysis of Escherichia coli / Shigella group: implications of genomic features associated with pathogenicity and ecological adaptation.
Zhang Y; Lin K
BMC Evol Biol; 2012 Sep; 12():174. PubMed ID: 22958895
[TBL] [Abstract][Full Text] [Related]
13. UBCG: Up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction.
Na SI; Kim YO; Yoon SH; Ha SM; Baek I; Chun J
J Microbiol; 2018 Apr; 56(4):280-285. PubMed ID: 29492869
[TBL] [Abstract][Full Text] [Related]
14. Robust classifying of prokaryotic genomes.
Korenblat K; Volkovich Z; Bolshoy A
Comput Biol Chem; 2012 Oct; 40():20-9. PubMed ID: 22940609
[TBL] [Abstract][Full Text] [Related]
15. Phylogenetic analysis using complete signature information of whole genomes and clustered Neighbour-Joining method.
Wu X; Wan XF; Wu G; Xu D; Lin G
Int J Bioinform Res Appl; 2006; 2(3):219-48. PubMed ID: 18048163
[TBL] [Abstract][Full Text] [Related]
16. Bacterial molecular phylogeny using supertree approach.
Daubin V; Gouy M; Perrière G
Genome Inform; 2001; 12():155-64. PubMed ID: 11791234
[TBL] [Abstract][Full Text] [Related]
17. Measuring genome conservation across taxa: divided strains and united kingdoms.
Kunin V; Ahren D; Goldovsky L; Janssen P; Ouzounis CA
Nucleic Acids Res; 2005; 33(2):616-21. PubMed ID: 15681613
[TBL] [Abstract][Full Text] [Related]
18. Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.
Ahrenfeldt J; Skaarup C; Hasman H; Pedersen AG; Aarestrup FM; Lund O
BMC Genomics; 2017 Jan; 18(1):19. PubMed ID: 28056767
[TBL] [Abstract][Full Text] [Related]
19. dCITE: Measuring Necessary Cladistic Information Can Help You Reduce Polytomy Artefacts in Trees.
Wise MJ
PLoS One; 2016; 11(11):e0166991. PubMed ID: 27898695
[TBL] [Abstract][Full Text] [Related]
20. ComPhy: prokaryotic composite distance phylogenies inferred from whole-genome gene sets.
Lin GN; Cai Z; Lin G; Chakraborty S; Xu D
BMC Bioinformatics; 2009 Jan; 10 Suppl 1(Suppl 1):S5. PubMed ID: 19208152
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
