BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

427 related articles for article (PubMed ID: 21166560)

  • 1. A polynomial-time algorithm computing lower and upper bounds of the rooted subtree prune and regraft distance.
    Kannan L; Li H; Mushegian A
    J Comput Biol; 2011 May; 18(5):743-57. PubMed ID: 21166560
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Lost in space? Generalising subtree prune and regraft to spaces of phylogenetic networks.
    Bordewich M; Linz S; Semple C
    J Theor Biol; 2017 Jun; 423():1-12. PubMed ID: 28414085
    [TBL] [Abstract][Full Text] [Related]  

  • 3. constNJ: an algorithm to reconstruct sets of phylogenetic trees satisfying pairwise topological constraints.
    Matsen FA
    J Comput Biol; 2010 Jun; 17(6):799-818. PubMed ID: 20500096
    [TBL] [Abstract][Full Text] [Related]  

  • 4. SPRIT: Identifying horizontal gene transfer in rooted phylogenetic trees.
    Hill T; Nordström KJ; Thollesson M; Säfström TM; Vernersson AK; Fredriksson R; Schiöth HB
    BMC Evol Biol; 2010 Feb; 10():42. PubMed ID: 20152048
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Exploring the Tiers of Rooted Phylogenetic Network Space Using Tail Moves.
    Janssen R; Jones M; Erdős PL; van Iersel L; Scornavacca C
    Bull Math Biol; 2018 Aug; 80(8):2177-2208. PubMed ID: 29948885
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Improved Practical Algorithms for Rooted Subtree Prune and Regraft (rSPR) Distance and Hybridization Number.
    Yamada K; Chen ZZ; Wang L
    J Comput Biol; 2020 Sep; 27(9):1422-1432. PubMed ID: 32048865
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A practical method for exact computation of subtree prune and regraft distance.
    Wu Y
    Bioinformatics; 2009 Jan; 25(2):190-6. PubMed ID: 19019848
    [TBL] [Abstract][Full Text] [Related]  

  • 8. On the fixed parameter tractability of agreement-based phylogenetic distances.
    Bordewich M; Scornavacca C; Tokac N; Weller M
    J Math Biol; 2017 Jan; 74(1-2):239-257. PubMed ID: 27221239
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Faster Exact Computation of rSPR Distance via Better Approximation.
    Chen ZZ; Harada Y; Nakamura Y; Wang L
    IEEE/ACM Trans Comput Biol Bioinform; 2018 Oct; ():. PubMed ID: 30387740
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Approximating subtree distances between phylogenies.
    Bonet ML; St John K; Mahindru R; Amenta N
    J Comput Biol; 2006 Oct; 13(8):1419-34. PubMed ID: 17061919
    [TBL] [Abstract][Full Text] [Related]  

  • 11. On Hill et al's conjecture for calculating the subtree prune and regraft distance between phylogenies.
    Linz S
    BMC Evol Biol; 2010 Oct; 10():334. PubMed ID: 21034464
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Consistency of topological moves based on the balanced minimum evolution principle of phylogenetic inference.
    Bordewich M; Gascuel O; Huber KT; Moulton V
    IEEE/ACM Trans Comput Biol Bioinform; 2009; 6(1):110-7. PubMed ID: 19179704
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Rearrangement moves on rooted phylogenetic networks.
    Gambette P; van Iersel L; Jones M; Lafond M; Pardi F; Scornavacca C
    PLoS Comput Biol; 2017 Aug; 13(8):e1005611. PubMed ID: 28763439
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Computing nearest neighbour interchange distances between ranked phylogenetic trees.
    Collienne L; Gavryushkin A
    J Math Biol; 2021 Jan; 82(1-2):8. PubMed ID: 33492606
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Phylogenetic identification of lateral genetic transfer events.
    Beiko RG; Hamilton N
    BMC Evol Biol; 2006 Feb; 6():15. PubMed ID: 16472400
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Neighborhoods of trees in circular orderings.
    Bastkowski S; Moulton V; Spillner A; Wu T
    Bull Math Biol; 2015 Jan; 77(1):46-70. PubMed ID: 25477080
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Designing an A* algorithm for calculating edit distance between rooted-unordered trees.
    Horesh Y; Mehr R; Unger R
    J Comput Biol; 2006; 13(6):1165-76. PubMed ID: 16901235
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A duality based 2-approximation algorithm for maximum agreement forest.
    Olver N; Schalekamp F; van der Ster S; Stougie L; van Zuylen A
    Math Program; 2023; 198(1):811-853. PubMed ID: 36845754
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Walks on SPR neighborhoods.
    Caceres AJ; Castillo J; Lee J; St John K
    IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(1):236-9. PubMed ID: 23702562
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Ranked Subtree Prune and Regraft.
    Collienne L; Whidden C; Gavryushkin A
    Bull Math Biol; 2024 Jan; 86(3):24. PubMed ID: 38294587
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 22.