279 related articles for article (PubMed ID: 21172910)
1. Functional integration of a metabolic network model and expression data without arbitrary thresholding.
Jensen PA; Papin JA
Bioinformatics; 2011 Feb; 27(4):541-7. PubMed ID: 21172910
[TBL] [Abstract][Full Text] [Related]
2. ICON-GEMs: integration of co-expression network in genome-scale metabolic models, shedding light through systems biology.
Paklao T; Suratanee A; Plaimas K
BMC Bioinformatics; 2023 Dec; 24(1):492. PubMed ID: 38129786
[TBL] [Abstract][Full Text] [Related]
3. TRFBA: an algorithm to integrate genome-scale metabolic and transcriptional regulatory networks with incorporation of expression data.
Motamedian E; Mohammadi M; Shojaosadati SA; Heydari M
Bioinformatics; 2017 Apr; 33(7):1057-1063. PubMed ID: 28065897
[TBL] [Abstract][Full Text] [Related]
4. OM-FBA: Integrate Transcriptomics Data with Flux Balance Analysis to Decipher the Cell Metabolism.
Guo W; Feng X
PLoS One; 2016; 11(4):e0154188. PubMed ID: 27100883
[TBL] [Abstract][Full Text] [Related]
5. Continuous modeling of metabolic networks with gene regulation in yeast and in vivo determination of rate parameters.
Moisset P; Vaisman D; Cintolesi A; Urrutia J; Rapaport I; Andrews BA; Asenjo JA
Biotechnol Bioeng; 2012 Sep; 109(9):2325-39. PubMed ID: 22447363
[TBL] [Abstract][Full Text] [Related]
6. Inferring metabolic states in uncharacterized environments using gene-expression measurements.
Rossell S; Huynen MA; Notebaart RA
PLoS Comput Biol; 2013; 9(3):e1002988. PubMed ID: 23555222
[TBL] [Abstract][Full Text] [Related]
7. Genome-level transcription data of Yersinia pestis analyzed with a new metabolic constraint-based approach.
Navid A; Almaas E
BMC Syst Biol; 2012 Dec; 6():150. PubMed ID: 23216785
[TBL] [Abstract][Full Text] [Related]
8. Sampling the solution space in genome-scale metabolic networks reveals transcriptional regulation in key enzymes.
Bordel S; Agren R; Nielsen J
PLoS Comput Biol; 2010 Jul; 6(7):e1000859. PubMed ID: 20657658
[TBL] [Abstract][Full Text] [Related]
9. Genome-Scale
Ando D; García Martín H
Methods Mol Biol; 2019; 1859():317-345. PubMed ID: 30421239
[TBL] [Abstract][Full Text] [Related]
10. Advances in the integration of transcriptional regulatory information into genome-scale metabolic models.
Vivek-Ananth RP; Samal A
Biosystems; 2016 Sep; 147():1-10. PubMed ID: 27287878
[TBL] [Abstract][Full Text] [Related]
11. TIGER: Toolbox for integrating genome-scale metabolic models, expression data, and transcriptional regulatory networks.
Jensen PA; Lutz KA; Papin JA
BMC Syst Biol; 2011 Sep; 5():147. PubMed ID: 21943338
[TBL] [Abstract][Full Text] [Related]
12. Predicting metabolic fluxes using gene expression differences as constraints.
van Berlo RJ; de Ridder D; Daran JM; Daran-Lapujade PA; Teusink B; Reinders MJ
IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(1):206-16. PubMed ID: 21071808
[TBL] [Abstract][Full Text] [Related]
13. Identification of functional modules using network topology and high-throughput data.
Ulitsky I; Shamir R
BMC Syst Biol; 2007 Jan; 1():8. PubMed ID: 17408515
[TBL] [Abstract][Full Text] [Related]
14. Why does yeast ferment? A flux balance analysis study.
Simeonidis E; Murabito E; Smallbone K; Westerhoff HV
Biochem Soc Trans; 2010 Oct; 38(5):1225-9. PubMed ID: 20863289
[TBL] [Abstract][Full Text] [Related]
15. Prediction of metabolic flux distribution from gene expression data based on the flux minimization principle.
Song HS; Reifman J; Wallqvist A
PLoS One; 2014; 9(11):e112524. PubMed ID: 25397773
[TBL] [Abstract][Full Text] [Related]
16. Prediction of metabolic fluxes from gene expression data with Huber penalty convex optimization function.
Zhang SW; Gou WL; Li Y
Mol Biosyst; 2017 May; 13(5):901-909. PubMed ID: 28338129
[TBL] [Abstract][Full Text] [Related]
17. Linking RNA measurements and proteomics with genome-scale models.
Gowen CM; Fong SS
Methods Mol Biol; 2013; 985():429-45. PubMed ID: 23417816
[TBL] [Abstract][Full Text] [Related]
18. Optimization of Multi-Omic Genome-Scale Models: Methodologies, Hands-on Tutorial, and Perspectives.
Vijayakumar S; Conway M; Lió P; Angione C
Methods Mol Biol; 2018; 1716():389-408. PubMed ID: 29222764
[TBL] [Abstract][Full Text] [Related]
19. Genome-scale metabolic networks.
Terzer M; Maynard ND; Covert MW; Stelling J
Wiley Interdiscip Rev Syst Biol Med; 2009; 1(3):285-297. PubMed ID: 20835998
[TBL] [Abstract][Full Text] [Related]
20. Steady-state and dynamic flux balance analysis of ethanol production by Saccharomyces cerevisiae.
Hjersted JL; Henson MA
IET Syst Biol; 2009 May; 3(3):167-79. PubMed ID: 19449977
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]