BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

135 related articles for article (PubMed ID: 21173459)

  • 1. Determination of glycan structure from tandem mass spectra.
    Böcker S; Kehr B; Rasche F
    IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(4):976-86. PubMed ID: 21173459
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A Machine Learning Based Approach to de novo Sequencing of Glycans from Tandem Mass Spectrometry Spectrum.
    Kumozaki S; Sato K; Sakakibara Y
    IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(6):1267-74. PubMed ID: 26671799
    [TBL] [Abstract][Full Text] [Related]  

  • 3. An Accurate de novo Algorithm for Glycan Topology Determination from Mass Spectra.
    Dong L; Shi B; Tian G; Li Y; Wang B; Zhou M
    IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(3):568-78. PubMed ID: 26357268
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Bioinformatics in glycomics: glycan characterization with mass spectrometric data using SimGlycan.
    Apte A; Meitei NS
    Methods Mol Biol; 2010; 600():269-81. PubMed ID: 19882135
    [TBL] [Abstract][Full Text] [Related]  

  • 5. An Improved Approach for N-Linked Glycan Structure Identification from HCD MS/MS Spectra.
    Sun W; Liu Y; Lajoie GA; Ma B; Zhang K
    IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(2):388-395. PubMed ID: 28489544
    [TBL] [Abstract][Full Text] [Related]  

  • 6. GlycoDeNovo2: An Improved MS/MS-Based
    Chen Z; Wei J; Tang Y; Lin C; Costello CE; Hong P
    J Am Soc Mass Spectrom; 2022 Mar; 33(3):436-445. PubMed ID: 35157458
    [TBL] [Abstract][Full Text] [Related]  

  • 7. GlycanAnalysis Plug-in: a database search tool for N-glycan structures using mass spectrometry.
    Morimoto K; Nishikaze T; Yoshizawa AC; Kajihara S; Aoshima K; Oda Y; Tanaka K
    Bioinformatics; 2015 Jul; 31(13):2217-9. PubMed ID: 25712693
    [TBL] [Abstract][Full Text] [Related]  

  • 8. De novo glycan structural identification from mass spectra using tree merging strategy.
    Ju F; Zhang J; Bu D; Li Y; Zhou J; Wang H; Wang Y; Huang C; Sun S
    Comput Biol Chem; 2019 Jun; 80():217-224. PubMed ID: 30999248
    [TBL] [Abstract][Full Text] [Related]  

  • 9. De Novo Glycan Sequencing by Electronic Excitation Dissociation and Fixed-Charge Derivatization.
    Tang Y; Pu Y; Gao J; Hong P; Costello CE; Lin C
    Anal Chem; 2018 Mar; 90(6):3793-3801. PubMed ID: 29443510
    [TBL] [Abstract][Full Text] [Related]  

  • 10. De novo glycan structure search with the CID MS/MS spectra of native N-glycopeptides.
    Peltoniemi H; Joenväärä S; Renkonen R
    Glycobiology; 2009 Jul; 19(7):707-14. PubMed ID: 19270074
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Tandem mass spectra of glycan substructures enable the multistage mass spectrometric identification of determinants on oligosaccharides.
    Everest-Dass AV; Kolarich D; Campbell MP; Packer NH
    Rapid Commun Mass Spectrom; 2013 May; 27(9):931-9. PubMed ID: 23592194
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Identification of glycan branching patterns using multistage mass spectrometry with spectra tree analysis.
    Wang H; Zhang J; Dong J; Hou M; Pan W; Bu D; Zhou J; Zhang Q; Wang Y; Zhao K; Li Y; Huang C; Sun S
    J Proteomics; 2020 Apr; 217():103649. PubMed ID: 31978548
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A Gibbs sampling approach to detection of tree motifs.
    Meireles LM; Akutsu T
    Genome Inform; 2005; 16(1):34-43. PubMed ID: 16362904
    [TBL] [Abstract][Full Text] [Related]  

  • 14. An approach for N-linked glycan identification from MS/MS spectra by target-decoy strategy.
    Sun W; Liu Y; Zhang K
    Comput Biol Chem; 2018 Jun; 74():391-398. PubMed ID: 29580737
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Efficient tree-matching methods for accurate carbohydrate database queries.
    Aoki KF; Yamaguchi A; Okuno Y; Akutsu T; Ueda N; Kanehisa M; Mamitsuka H
    Genome Inform; 2003; 14():134-43. PubMed ID: 15706528
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Complexities and algorithms for glycan sequencing using tandem mass spectrometry.
    Shan B; Ma B; Zhang K; Lajoie G
    J Bioinform Comput Biol; 2008 Feb; 6(1):77-91. PubMed ID: 18324747
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A global representation of the carbohydrate structures: a tool for the analysis of glycan.
    Hashimoto K; Kawano S; Goto S; Aoki-Kinoshita KF; Kawashima M; Kanehisa M
    Genome Inform; 2005; 16(1):214-22. PubMed ID: 16362924
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Automated interpretation of MS/MS spectra of oligosaccharides.
    Tang H; Mechref Y; Novotny MV
    Bioinformatics; 2005 Jun; 21 Suppl 1(Suppl 1):i431-9. PubMed ID: 15961488
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Collision-induced dissociation tandem mass spectrometry for structural elucidation of glycans.
    Li B; An HJ; Hedrick JL; Lebrilla CB
    Methods Mol Biol; 2009; 534():133-45. PubMed ID: 19277555
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Automatic Full Glycan Structural Determination through Logically Derived Sequence Tandem Mass Spectrometry.
    Tsai ST; Liew CY; Hsu C; Huang SP; Weng WC; Kuo YH; Ni CK
    Chembiochem; 2019 Sep; 20(18):2351-2359. PubMed ID: 31016827
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.