BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

743 related articles for article (PubMed ID: 21176179)

  • 1. From RNA-seq reads to differential expression results.
    Oshlack A; Robinson MD; Young MD
    Genome Biol; 2010; 11(12):220. PubMed ID: 21176179
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Differential Expression Analysis of RNA-seq Reads: Overview, Taxonomy, and Tools.
    Chowdhury HA; Bhattacharyya DK; Kalita JK
    IEEE/ACM Trans Comput Biol Bioinform; 2020; 17(2):566-586. PubMed ID: 30281477
    [TBL] [Abstract][Full Text] [Related]  

  • 3. SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis.
    Johnson BK; Scholz MB; Teal TK; Abramovitch RB
    BMC Bioinformatics; 2016 Feb; 17():66. PubMed ID: 26847232
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Polyester: simulating RNA-seq datasets with differential transcript expression.
    Frazee AC; Jaffe AE; Langmead B; Leek JT
    Bioinformatics; 2015 Sep; 31(17):2778-84. PubMed ID: 25926345
    [TBL] [Abstract][Full Text] [Related]  

  • 5. In Silico HLA Typing Using Standard RNA-Seq Sequence Reads.
    Boegel S; Scholtalbers J; Löwer M; Sahin U; Castle JC
    Methods Mol Biol; 2015; 1310():247-58. PubMed ID: 26024640
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Mapping RNA-seq Reads with STAR.
    Dobin A; Gingeras TR
    Curr Protoc Bioinformatics; 2015 Sep; 51():11.14.1-11.14.19. PubMed ID: 26334920
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Systematic evaluation of spliced alignment programs for RNA-seq data.
    Engström PG; Steijger T; Sipos B; Grant GR; Kahles A; Rätsch G; Goldman N; Hubbard TJ; Harrow J; Guigó R; Bertone P;
    Nat Methods; 2013 Dec; 10(12):1185-91. PubMed ID: 24185836
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Near-optimal probabilistic RNA-seq quantification.
    Bray NL; Pimentel H; Melsted P; Pachter L
    Nat Biotechnol; 2016 May; 34(5):525-7. PubMed ID: 27043002
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Streaming fragment assignment for real-time analysis of sequencing experiments.
    Roberts A; Pachter L
    Nat Methods; 2013 Jan; 10(1):71-3. PubMed ID: 23160280
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Genome-Wide circRNA Profiling from RNA-seq Data.
    Cooper DA; Cortés-López M; Miura P
    Methods Mol Biol; 2018; 1724():27-41. PubMed ID: 29322438
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Detecting Multivariate Gene Interactions in RNA-Seq Data Using Optimal Bayesian Classification.
    Knight JM; Ivanov I; Triff K; Chapkin RS; Dougherty ER
    IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(2):484-493. PubMed ID: 26441451
    [TBL] [Abstract][Full Text] [Related]  

  • 12. rSeqNP: a non-parametric approach for detecting differential expression and splicing from RNA-Seq data.
    Shi Y; Chinnaiyan AM; Jiang H
    Bioinformatics; 2015 Jul; 31(13):2222-4. PubMed ID: 25717189
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The promise of single-cell RNA sequencing for kidney disease investigation.
    Wu H; Humphreys BD
    Kidney Int; 2017 Dec; 92(6):1334-1342. PubMed ID: 28893418
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Bias, robustness and scalability in single-cell differential expression analysis.
    Soneson C; Robinson MD
    Nat Methods; 2018 Apr; 15(4):255-261. PubMed ID: 29481549
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A survey of best practices for RNA-seq data analysis.
    Conesa A; Madrigal P; Tarazona S; Gomez-Cabrero D; Cervera A; McPherson A; Szcześniak MW; Gaffney DJ; Elo LL; Zhang X; Mortazavi A
    Genome Biol; 2016 Jan; 17():13. PubMed ID: 26813401
    [TBL] [Abstract][Full Text] [Related]  

  • 16. READemption-a tool for the computational analysis of deep-sequencing-based transcriptome data.
    Förstner KU; Vogel J; Sharma CM
    Bioinformatics; 2014 Dec; 30(23):3421-3. PubMed ID: 25123900
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Pseudotime Reconstruction Using TSCAN.
    Ji Z; Ji H
    Methods Mol Biol; 2019; 1935():115-124. PubMed ID: 30758823
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Group A Streptococcus Transcriptome Analysis.
    Sanson M; Flores AR
    Methods Mol Biol; 2020; 2136():113-133. PubMed ID: 32430816
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Experimental Design and Power Calculation for RNA-seq Experiments.
    Wu Z; Wu H
    Methods Mol Biol; 2016; 1418():379-90. PubMed ID: 27008024
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Sequences to Differences in Gene Expression: Analysis of RNA-Seq Data.
    Pavlovich PV; Cauchy P
    Methods Mol Biol; 2022; 2508():279-318. PubMed ID: 35737247
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 38.