183 related articles for article (PubMed ID: 21192664)
1. Molecular dynamics of potential rRNA binders: single-stranded nucleic acids and some analogues.
Panecka J; Mura C; Trylska J
J Phys Chem B; 2011 Jan; 115(3):532-46. PubMed ID: 21192664
[TBL] [Abstract][Full Text] [Related]
2. Recognition of RNA by amide modified backbone nucleic acids: molecular dynamics simulations of DNA-RNA hybrids in aqueous solution.
Nina M; Fonné-Pfister R; Beaudegnies R; Chekatt H; Jung PM; Murphy-Kessabi F; De Mesmaeker A; Wendeborn S
J Am Chem Soc; 2005 Apr; 127(16):6027-38. PubMed ID: 15839703
[TBL] [Abstract][Full Text] [Related]
3. The alpha-helical peptide nucleic acid concept: merger of peptide secondary structure and codified nucleic acid recognition.
Huang Y; Dey S; Zhang X; Sönnichsen F; Garner P
J Am Chem Soc; 2004 Apr; 126(14):4626-40. PubMed ID: 15070379
[TBL] [Abstract][Full Text] [Related]
4. MD simulations of homomorphous PNA, DNA, and RNA single strands: characterization and comparison of conformations and dynamics.
Sen S; Nilsson L
J Am Chem Soc; 2001 Aug; 123(30):7414-22. PubMed ID: 11472173
[TBL] [Abstract][Full Text] [Related]
5. Correlating structure and stability of DNA duplexes with incorporated 2'-O-modified RNA analogues.
Tereshko V; Portmann S; Tay EC; Martin P; Natt F; Altmann KH; Egli M
Biochemistry; 1998 Jul; 37(30):10626-34. PubMed ID: 9692952
[TBL] [Abstract][Full Text] [Related]
6. Promising nucleic acid analogs and mimics: characteristic features and applications of PNA, LNA, and morpholino.
Karkare S; Bhatnagar D
Appl Microbiol Biotechnol; 2006 Aug; 71(5):575-86. PubMed ID: 16683135
[TBL] [Abstract][Full Text] [Related]
7. Molecular dynamics simulations of cyclohexyl modified peptide nucleic acids (PNA).
Sharma S; Sonavane UB; Joshi RR
J Biomol Struct Dyn; 2010 Apr; 27(5):663-76. PubMed ID: 20085383
[TBL] [Abstract][Full Text] [Related]
8. An experimental study of mechanism and specificity of peptide nucleic acid (PNA) binding to duplex DNA.
Kuhn H; Demidov VV; Nielsen PE; Frank-Kamenetskii MD
J Mol Biol; 1999 Mar; 286(5):1337-45. PubMed ID: 10064701
[TBL] [Abstract][Full Text] [Related]
9. Conformational analysis of single-base bulges in A-form DNA and RNA using a hierarchical approach and energetic evaluation with a continuum solvent model.
Zacharias M; Sklenar H
J Mol Biol; 1999 Jun; 289(2):261-75. PubMed ID: 10366504
[TBL] [Abstract][Full Text] [Related]
10. PNA hybridizes to complementary oligonucleotides obeying the Watson-Crick hydrogen-bonding rules.
Egholm M; Buchardt O; Christensen L; Behrens C; Freier SM; Driver DA; Berg RH; Kim SK; Norden B; Nielsen PE
Nature; 1993 Oct; 365(6446):566-8. PubMed ID: 7692304
[TBL] [Abstract][Full Text] [Related]
11. Single-stranded adenine-rich DNA and RNA retain structural characteristics of their respective double-stranded conformations and show directional differences in stacking pattern.
Isaksson J; Acharya S; Barman J; Cheruku P; Chattopadhyaya J
Biochemistry; 2004 Dec; 43(51):15996-6010. PubMed ID: 15609994
[TBL] [Abstract][Full Text] [Related]
12. The structure of a gamma-modified peptide nucleic acid duplex.
He W; Crawford MJ; Rapireddy S; Madrid M; Gil RR; Ly DH; Achim C
Mol Biosyst; 2010 Sep; 6(9):1619-29. PubMed ID: 20386807
[TBL] [Abstract][Full Text] [Related]
13. Quantitative analysis of nucleic acid three-dimensional structures.
Gendron P; Lemieux S; Major F
J Mol Biol; 2001 May; 308(5):919-36. PubMed ID: 11352582
[TBL] [Abstract][Full Text] [Related]
14. Sequence-specific purification of nucleic acids by PNA-controlled hybrid selection.
Orum H; Nielsen PE; Jørgensen M; Larsson C; Stanley C; Koch T
Biotechniques; 1995 Sep; 19(3):472-80. PubMed ID: 7495562
[TBL] [Abstract][Full Text] [Related]
15. The influence of helix morphology on co-operative polyamide backbone conformational flexibility in peptide nucleic acid complexes.
Topham CM; Smith JC
J Mol Biol; 1999 Oct; 292(5):1017-38. PubMed ID: 10512700
[TBL] [Abstract][Full Text] [Related]
16. Structure, dynamics, and elasticity of free 16s rRNA helix 44 studied by molecular dynamics simulations.
Réblová K; Lankas F; Rázga F; Krasovska MV; Koca J; Sponer J
Biopolymers; 2006 Aug; 82(5):504-20. PubMed ID: 16538608
[TBL] [Abstract][Full Text] [Related]
17. Sequence-specific recognition of DNA oligomer using peptide nucleic acid (PNA)-modified synthetic ion channels: PNA/DNA hybridization in nanoconfined environment.
Ali M; Neumann R; Ensinger W
ACS Nano; 2010 Dec; 4(12):7267-74. PubMed ID: 21082785
[TBL] [Abstract][Full Text] [Related]
18. Antisense RNA regulation in prokaryotes: rapid RNA/RNA interaction facilitated by a general U-turn loop structure.
Franch T; Petersen M; Wagner EG; Jacobsen JP; Gerdes K
J Mol Biol; 1999 Dec; 294(5):1115-25. PubMed ID: 10600370
[TBL] [Abstract][Full Text] [Related]
19. Strategies for the design of RNA-binding small molecules.
Aboul-ela F
Future Med Chem; 2010 Jan; 2(1):93-119. PubMed ID: 21426048
[TBL] [Abstract][Full Text] [Related]
20. Synthesis and properties of the simplified nucleic acid glycol nucleic acid.
Meggers E; Zhang L
Acc Chem Res; 2010 Aug; 43(8):1092-102. PubMed ID: 20405911
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
