186 related articles for article (PubMed ID: 21209967)
1. Understanding the sequence-dependence of DNA groove dimensions: implications for DNA interactions.
Oguey C; Foloppe N; Hartmann B
PLoS One; 2010 Dec; 5(12):e15931. PubMed ID: 21209967
[TBL] [Abstract][Full Text] [Related]
2. Sequence preference for BI/BII conformations in DNA: MD and crystal structure data analysis.
Madhumalar A; Bansal M
J Biomol Struct Dyn; 2005 Aug; 23(1):13-27. PubMed ID: 15918673
[TBL] [Abstract][Full Text] [Related]
3. Quantification of DNA BI/BII backbone states in solution. Implications for DNA overall structure and recognition.
Heddi B; Foloppe N; Bouchemal N; Hantz E; Hartmann B
J Am Chem Soc; 2006 Jul; 128(28):9170-7. PubMed ID: 16834390
[TBL] [Abstract][Full Text] [Related]
4. BII nucleotides in the B and C forms of natural-sequence polymeric DNA: A new model for the C form of DNA.
van Dam L; Levitt MH
J Mol Biol; 2000 Dec; 304(4):541-61. PubMed ID: 11099379
[TBL] [Abstract][Full Text] [Related]
5. NMR studies of DNA support the role of pre-existing minor groove variations in nucleosome indirect readout.
Xu X; Ben Imeddourene A; Zargarian L; Foloppe N; Mauffret O; Hartmann B
Biochemistry; 2014 Sep; 53(35):5601-12. PubMed ID: 25102280
[TBL] [Abstract][Full Text] [Related]
6. DNA minor groove electrostatic potential: influence of sequence-specific transitions of the torsion angle gamma and deoxyribose conformations.
Zhitnikova MY; Shestopalova AV
J Biomol Struct Dyn; 2017 Nov; 35(15):3384-3397. PubMed ID: 27800709
[TBL] [Abstract][Full Text] [Related]
7. DNA fine structure and dynamics in crystals and in solution: the impact of BI/BII backbone conformations.
Djuranovic D; Hartmann B
Biopolymers; 2004 Feb; 73(3):356-68. PubMed ID: 14755572
[TBL] [Abstract][Full Text] [Related]
8. Sequence-specific transitions of the torsion angle gamma change the polar-hydrophobic profile of the DNA grooves: implication for indirect protein-DNA recognition.
Zhitnikova MY; Boryskina OP; Shestopalova AV
J Biomol Struct Dyn; 2014; 32(10):1670-85. PubMed ID: 23998351
[TBL] [Abstract][Full Text] [Related]
9. The role of DNA structure and dynamics in the recognition of bovine papillomavirus E2 protein target sequences.
Djuranovic D; Oguey C; Hartmann B
J Mol Biol; 2004 Jun; 339(4):785-96. PubMed ID: 15165850
[TBL] [Abstract][Full Text] [Related]
10. 1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium.
Chiu TK; Dickerson RE
J Mol Biol; 2000 Aug; 301(4):915-45. PubMed ID: 10966796
[TBL] [Abstract][Full Text] [Related]
11. Contribution of the intrinsic mechanical energy of the phosphodiester linkage to the relative stability of the A, BI, and BII forms of duplex DNA.
MacKerell AD
J Phys Chem B; 2009 Mar; 113(10):3235-44. PubMed ID: 19708270
[TBL] [Abstract][Full Text] [Related]
12. Intrinsic flexibility of B-DNA: the experimental TRX scale.
Heddi B; Oguey C; Lavelle C; Foloppe N; Hartmann B
Nucleic Acids Res; 2010 Jan; 38(3):1034-47. PubMed ID: 19920127
[TBL] [Abstract][Full Text] [Related]
13. A-form conformational motifs in ligand-bound DNA structures.
Lu XJ; Shakked Z; Olson WK
J Mol Biol; 2000 Jul; 300(4):819-40. PubMed ID: 10891271
[TBL] [Abstract][Full Text] [Related]
14. Differential Deformability of the DNA Minor Groove and Altered BI/BII Backbone Conformational Equilibrium by the Monovalent Ions Li(+), Na(+), K(+), and Rb(+) via Water-Mediated Hydrogen Bonding.
Savelyev A; MacKerell AD
J Chem Theory Comput; 2015 Sep; 11(9):4473-85. PubMed ID: 26575937
[TBL] [Abstract][Full Text] [Related]
15. Hydration patterns and intermolecular interactions in A-DNA crystal structures. Implications for DNA recognition.
Eisenstein M; Shakked Z
J Mol Biol; 1995 May; 248(3):662-78. PubMed ID: 7752232
[TBL] [Abstract][Full Text] [Related]
16. 31P NMR investigation of backbone dynamics in DNA binding sites.
Tian Y; Kayatta M; Shultis K; Gonzalez A; Mueller LJ; Hatcher ME
J Phys Chem B; 2009 Mar; 113(9):2596-603. PubMed ID: 18717548
[TBL] [Abstract][Full Text] [Related]
17. Effect of a neutralized phosphate backbone on the minor groove of B-DNA: molecular dynamics simulation studies.
Hamelberg D; Williams LD; Wilson WD
Nucleic Acids Res; 2002 Aug; 30(16):3615-23. PubMed ID: 12177304
[TBL] [Abstract][Full Text] [Related]
18. Crystal structures of A-DNA duplexes.
Wahl MC; Sundaralingam M
Biopolymers; 1997; 44(1):45-63. PubMed ID: 9097733
[TBL] [Abstract][Full Text] [Related]
19. Solution structure of the covalent duocarmycin A-DNA duplex complex.
Lin CH; Patel DJ
J Mol Biol; 1995 Apr; 248(1):162-79. PubMed ID: 7731041
[TBL] [Abstract][Full Text] [Related]
20. Conformational characteristics and correlations in crystal structures of nucleic acid oligonucleotides: evidence for sub-states.
Djuranovic D; Hartmann B
J Biomol Struct Dyn; 2003 Jun; 20(6):771-88. PubMed ID: 12744707
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
