These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

273 related articles for article (PubMed ID: 21220121)

  • 1. SAXS ensemble refinement of ESCRT-III CHMP3 conformational transitions.
    Różycki B; Kim YC; Hummer G
    Structure; 2011 Jan; 19(1):109-16. PubMed ID: 21220121
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Molecular Dynamics Simulations Combined with Nuclear Magnetic Resonance and/or Small-Angle X-ray Scattering Data for Characterizing Intrinsically Disordered Protein Conformational Ensembles.
    Chan-Yao-Chong M; Durand D; Ha-Duong T
    J Chem Inf Model; 2019 May; 59(5):1743-1758. PubMed ID: 30840442
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Solution structure of the ESCRT-I complex by small-angle X-ray scattering, EPR, and FRET spectroscopy.
    Boura E; Rózycki B; Herrick DZ; Chung HS; Vecer J; Eaton WA; Cafiso DS; Hummer G; Hurley JH
    Proc Natl Acad Sci U S A; 2011 Jun; 108(23):9437-42. PubMed ID: 21596998
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Inferring Structural Ensembles of Flexible and Dynamic Macromolecules Using Bayesian, Maximum Entropy, and Minimal-Ensemble Refinement Methods.
    Köfinger J; Różycki B; Hummer G
    Methods Mol Biol; 2019; 2022():341-352. PubMed ID: 31396910
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Structure and ensemble refinement against SAXS data: Combining MD simulations with Bayesian inference or with the maximum entropy principle.
    Chatzimagas L; Hub JS
    Methods Enzymol; 2023; 678():23-54. PubMed ID: 36641209
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SAXS-Restrained Ensemble Simulations of Intrinsically Disordered Proteins with Commitment to the Principle of Maximum Entropy.
    Hermann MR; Hub JS
    J Chem Theory Comput; 2019 Sep; 15(9):5103-5115. PubMed ID: 31402649
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Utilizing Coarse-Grained Modeling and Monte Carlo Simulations to Evaluate the Conformational Ensemble of Intrinsically Disordered Proteins and Regions.
    Cragnell C; Rieloff E; Skepö M
    J Mol Biol; 2018 Aug; 430(16):2478-2492. PubMed ID: 29573987
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Structures of Dynamic Protein Complexes: Hybrid Techniques to Study MAP Kinase Complexes and the ESCRT System.
    Peti W; Page R; Boura E; Różycki B
    Methods Mol Biol; 2018; 1688():375-389. PubMed ID: 29151218
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Solution structure of the ESCRT-I and -II supercomplex: implications for membrane budding and scission.
    Boura E; Różycki B; Chung HS; Herrick DZ; Canagarajah B; Cafiso DS; Eaton WA; Hummer G; Hurley JH
    Structure; 2012 May; 20(5):874-86. PubMed ID: 22579254
    [TBL] [Abstract][Full Text] [Related]  

  • 10. ESCRT-III CHMP2A and CHMP3 form variable helical polymers in vitro and act synergistically during HIV-1 budding.
    Effantin G; Dordor A; Sandrin V; Martinelli N; Sundquist WI; Schoehn G; Weissenhorn W
    Cell Microbiol; 2013 Feb; 15(2):213-26. PubMed ID: 23051622
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Coarse-grained modeling of the intrinsically disordered protein Histatin 5 in solution: Monte Carlo simulations in combination with SAXS.
    Cragnell C; Durand D; Cabane B; Skepö M
    Proteins; 2016 Jun; 84(6):777-91. PubMed ID: 26914439
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Hybrid Methods for Modeling Protein Structures Using Molecular Dynamics Simulations and Small-Angle X-Ray Scattering Data.
    Ekimoto T; Ikeguchi M
    Adv Exp Med Biol; 2018; 1105():237-258. PubMed ID: 30617833
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Bayesian inference of protein ensembles from SAXS data.
    Antonov LD; Olsson S; Boomsma W; Hamelryck T
    Phys Chem Chem Phys; 2016 Feb; 18(8):5832-8. PubMed ID: 26548662
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Accurate flexible fitting of high-resolution protein structures to small-angle x-ray scattering data using a coarse-grained model with implicit hydration shell.
    Zheng W; Tekpinar M
    Biophys J; 2011 Dec; 101(12):2981-91. PubMed ID: 22208197
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A practical guide to small angle X-ray scattering (SAXS) of flexible and intrinsically disordered proteins.
    Kikhney AG; Svergun DI
    FEBS Lett; 2015 Sep; 589(19 Pt A):2570-7. PubMed ID: 26320411
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Comment on the Optimal Parameters to Derive Intrinsically Disordered Protein Conformational Ensembles from Small-Angle X-ray Scattering Data Using the Ensemble Optimization Method.
    Sagar A; Jeffries CM; Petoukhov MV; Svergun DI; Bernadó P
    J Chem Theory Comput; 2021 Apr; 17(4):2014-2021. PubMed ID: 33725442
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Determination of Protein Structural Ensembles by Hybrid-Resolution SAXS Restrained Molecular Dynamics.
    Paissoni C; Jussupow A; Camilloni C
    J Chem Theory Comput; 2020 Apr; 16(4):2825-2834. PubMed ID: 32119546
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Refining conformational ensembles of flexible proteins against small-angle x-ray scattering data.
    Pesce F; Lindorff-Larsen K
    Biophys J; 2021 Nov; 120(22):5124-5135. PubMed ID: 34627764
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Conformational and oligomeric states of SPOP from small-angle X-ray scattering and molecular dynamics simulations.
    Thomasen FE; Cuneo MJ; Mittag T; Lindorff-Larsen K
    Elife; 2023 Mar; 12():. PubMed ID: 36856266
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Improving Coarse-Grained Protein Force Fields with Small-Angle X-ray Scattering Data.
    Latham AP; Zhang B
    J Phys Chem B; 2019 Feb; 123(5):1026-1034. PubMed ID: 30620594
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.