164 related articles for article (PubMed ID: 21233522)
1. Bayesian models and algorithms for protein β-sheet prediction.
Aydin Z; Altunbasak Y; Erdogan H
IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(2):395-409. PubMed ID: 21233522
[TBL] [Abstract][Full Text] [Related]
2. Efficient dynamic programming algorithm with prior knowledge for protein β-strand alignment.
Sabzekar M; Naghibzadeh M; Sadri J
J Theor Biol; 2017 Mar; 417():43-50. PubMed ID: 28108305
[TBL] [Abstract][Full Text] [Related]
3. Contributions of residue pairing to beta-sheet formation: conservation and covariation of amino acid residue pairs on antiparallel beta-strands.
Mandel-Gutfreund Y; Zaremba SM; Gregoret LM
J Mol Biol; 2001 Feb; 305(5):1145-59. PubMed ID: 11162120
[TBL] [Abstract][Full Text] [Related]
4. Prediction of strand pairing in antiparallel and parallel beta-sheets using information theory.
Steward RE; Thornton JM
Proteins; 2002 Aug; 48(2):178-91. PubMed ID: 12112687
[TBL] [Abstract][Full Text] [Related]
5. Identification of residue pairing in interacting β-strands from a predicted residue contact map.
Mao W; Wang T; Zhang W; Gong H
BMC Bioinformatics; 2018 Apr; 19(1):146. PubMed ID: 29673311
[TBL] [Abstract][Full Text] [Related]
6. Three-stage prediction of protein beta-sheets by neural networks, alignments and graph algorithms.
Cheng J; Baldi P
Bioinformatics; 2005 Jun; 21 Suppl 1():i75-84. PubMed ID: 15961501
[TBL] [Abstract][Full Text] [Related]
7. Enhancement of Protein β-Sheet Topology Prediction Using Maximum Weight Disjoint Path Cover.
Dehghani T; Naghibzadeh M; Sadri J
IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(6):1936-1947. PubMed ID: 29994539
[TBL] [Abstract][Full Text] [Related]
8. BuildBeta--a system for automatically constructing beta sheets.
Max N; Hu C; Kreylos O; Crivelli S
Proteins; 2010 Feb; 78(3):559-74. PubMed ID: 19768785
[TBL] [Abstract][Full Text] [Related]
9. Studies on the rules of β-strand alignment in a protein β-sheet structure.
Zhang L; Zhang N; Ruan JS; Zhang T
J Theor Biol; 2011 Sep; 285(1):69-76. PubMed ID: 21745480
[TBL] [Abstract][Full Text] [Related]
10. Protein β-sheet prediction using an efficient dynamic programming algorithm.
Sabzekar M; Naghibzadeh M; Eghdami M; Aydin Z
Comput Biol Chem; 2017 Oct; 70():142-155. PubMed ID: 28881217
[TBL] [Abstract][Full Text] [Related]
11. The influence of gapped positions in multiple sequence alignments on secondary structure prediction methods.
Simossis VA; Heringa J
Comput Biol Chem; 2004 Dec; 28(5-6):351-66. PubMed ID: 15556476
[TBL] [Abstract][Full Text] [Related]
12. Bayesian segmentation of protein secondary structure.
Schmidler SC; Liu JS; Brutlag DL
J Comput Biol; 2000; 7(1-2):233-48. PubMed ID: 10890399
[TBL] [Abstract][Full Text] [Related]
13. Protein secondary structure prediction using local alignments.
Salamov AA; Solovyev VV
J Mol Biol; 1997 Apr; 268(1):31-6. PubMed ID: 9149139
[TBL] [Abstract][Full Text] [Related]
14. Contact prediction for beta and alpha-beta proteins using integer linear optimization and its impact on the first principles 3D structure prediction method ASTRO-FOLD.
Rajgaria R; Wei Y; Floudas CA
Proteins; 2010 Jun; 78(8):1825-46. PubMed ID: 20225257
[TBL] [Abstract][Full Text] [Related]
15. Secondary structure assignment that accurately reflects physical and evolutionary characteristics.
Cubellis MV; Cailliez F; Lovell SC
BMC Bioinformatics; 2005 Dec; 6 Suppl 4(Suppl 4):S8. PubMed ID: 16351757
[TBL] [Abstract][Full Text] [Related]
16. Prediction of the parallel/antiparallel orientation of beta-strands using amino acid pairing preferences and support vector machines.
Zhang N; Duan G; Gao S; Ruan J; Zhang T
J Theor Biol; 2010 Apr; 263(3):360-8. PubMed ID: 20035768
[TBL] [Abstract][Full Text] [Related]
17. Bayesian segmental models with multiple sequence alignment profiles for protein secondary structure and contact map prediction.
Chu W; Ghahramani Z; Podtelezhnikov A; Wild DL
IEEE/ACM Trans Comput Biol Bioinform; 2006; 3(2):98-113. PubMed ID: 17048397
[TBL] [Abstract][Full Text] [Related]
18. A method for protein accessibility prediction based on residue types and conformational states.
Zarei R; Arab S; Sadeghi M
Comput Biol Chem; 2007 Oct; 31(5-6):384-8. PubMed ID: 17888743
[TBL] [Abstract][Full Text] [Related]
19. Strand-loop-strand motifs: prediction of hairpins and diverging turns in proteins.
Kuhn M; Meiler J; Baker D
Proteins; 2004 Feb; 54(2):282-8. PubMed ID: 14696190
[TBL] [Abstract][Full Text] [Related]
20. Propensities of Amino Acid Pairings in Secondary Structure of Globular Proteins.
Nacar C
Protein J; 2020 Feb; 39(1):21-32. PubMed ID: 31933010
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
