164 related articles for article (PubMed ID: 21233522)
21. BetaDL: A protein beta-sheet predictor utilizing a deep learning model and independent set solution.
Dehghani T; Naghibzadeh M; Eghdami M
Comput Biol Med; 2019 Jan; 104():241-249. PubMed ID: 30530227
[TBL] [Abstract][Full Text] [Related]
22. Fold recognition and accurate sequence-structure alignment of sequences directing beta-sheet proteins.
McDonnell AV; Menke M; Palmer N; King J; Cowen L; Berger B
Proteins; 2006 Jun; 63(4):976-85. PubMed ID: 16547930
[TBL] [Abstract][Full Text] [Related]
23. KScons: a Bayesian approach for protein residue contact prediction using the knob-socket model of protein tertiary structure.
Li Q; Dahl DB; Vannucci M; Joo H; Tsai JW
Bioinformatics; 2016 Dec; 32(24):3774-3781. PubMed ID: 27559156
[TBL] [Abstract][Full Text] [Related]
24. Parallel and antiparallel β-strands differ in amino acid composition and availability of short constituent sequences.
Tsutsumi M; Otaki JM
J Chem Inf Model; 2011 Jun; 51(6):1457-64. PubMed ID: 21520893
[TBL] [Abstract][Full Text] [Related]
25. Using inferred residue contacts to distinguish between correct and incorrect protein models.
Miller CS; Eisenberg D
Bioinformatics; 2008 Jul; 24(14):1575-82. PubMed ID: 18511466
[TBL] [Abstract][Full Text] [Related]
26. BETASCAN: probable beta-amyloids identified by pairwise probabilistic analysis.
Bryan AW; Menke M; Cowen LJ; Lindquist SL; Berger B
PLoS Comput Biol; 2009 Mar; 5(3):e1000333. PubMed ID: 19325876
[TBL] [Abstract][Full Text] [Related]
27. The interstrand amino acid pairs play a significant role in determining the parallel or antiparallel orientation of beta-strands.
Zhang N; Ruan J; Duan G; Gao S; Zhang T
Biochem Biophys Res Commun; 2009 Aug; 386(3):537-43. PubMed ID: 19540200
[TBL] [Abstract][Full Text] [Related]
28. Beta edge strands in protein structure prediction and aggregation.
Siepen JA; Radford SE; Westhead DR
Protein Sci; 2003 Oct; 12(10):2348-59. PubMed ID: 14500893
[TBL] [Abstract][Full Text] [Related]
29. Protein fold recognition by mapping predicted secondary structures.
Russell RB; Copley RR; Barton GJ
J Mol Biol; 1996 Jun; 259(3):349-65. PubMed ID: 8676374
[TBL] [Abstract][Full Text] [Related]
30. Prediction of protein secondary structure based on residue pair types and conformational states using dynamic programming algorithm.
Sadeghi M; Parto S; Arab S; Ranjbar B
FEBS Lett; 2005 Jun; 579(16):3397-400. PubMed ID: 15936021
[TBL] [Abstract][Full Text] [Related]
31. Using PconsC4 and PconsFold2 to Predict Protein Structure.
Bassot C; Menendez Hurtado D; Elofsson A
Curr Protoc Bioinformatics; 2019 Jun; 66(1):e75. PubMed ID: 31063641
[TBL] [Abstract][Full Text] [Related]
32. Structure-based evaluation of sequence comparison and fold recognition alignment accuracy.
Domingues FS; Lackner P; Andreeva A; Sippl MJ
J Mol Biol; 2000 Apr; 297(4):1003-13. PubMed ID: 10736233
[TBL] [Abstract][Full Text] [Related]
33. Adaptive Smith-Waterman residue match seeding for protein structural alignment.
Topham CM; Rouquier M; Tarrat N; André I
Proteins; 2013 Oct; 81(10):1823-39. PubMed ID: 23720362
[TBL] [Abstract][Full Text] [Related]
34. Protein fold recognition by prediction-based threading.
Rost B; Schneider R; Sander C
J Mol Biol; 1997 Jul; 270(3):471-80. PubMed ID: 9237912
[TBL] [Abstract][Full Text] [Related]
35. NdPASA: a novel pairwise protein sequence alignment algorithm that incorporates neighbor-dependent amino acid propensities.
Wang J; Feng JA
Proteins; 2005 Feb; 58(3):628-37. PubMed ID: 15616964
[TBL] [Abstract][Full Text] [Related]
36. Prediction of beta-strand packing interactions using the signature product.
Brown WM; Martin S; Chabarek JP; Strauss C; Faulon JL
J Mol Model; 2006 Feb; 12(3):355-61. PubMed ID: 16365772
[TBL] [Abstract][Full Text] [Related]
37. Predicting protein β-sheet contacts using a maximum entropy-based correlated mutation measure.
Burkoff NS; Várnai C; Wild DL
Bioinformatics; 2013 Mar; 29(5):580-7. PubMed ID: 23314126
[TBL] [Abstract][Full Text] [Related]
38. Bayesian coestimation of phylogeny and sequence alignment.
Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
[TBL] [Abstract][Full Text] [Related]
39. Improved beta-protein structure prediction by multilevel optimization of nonlocal strand pairings and local backbone conformation.
Bradley P; Baker D
Proteins; 2006 Dec; 65(4):922-9. PubMed ID: 17034045
[TBL] [Abstract][Full Text] [Related]
40. Predicting solvent accessibility: higher accuracy using Bayesian statistics and optimized residue substitution classes.
Thompson MJ; Goldstein RA
Proteins; 1996 May; 25(1):38-47. PubMed ID: 8727318
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]