These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

102 related articles for article (PubMed ID: 21233528)

  • 1. Semantics and ambiguity of stochastic RNA family models.
    Giegerich R; Höner zu Siederdissen C
    IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(2):499-516. PubMed ID: 21233528
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
    Matsui H; Sato K; Sakakibara Y
    Proc IEEE Comput Syst Bioinform Conf; 2004; ():290-9. PubMed ID: 16448022
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
    Matsui H; Sato K; Sakakibara Y
    Bioinformatics; 2005 Jun; 21(11):2611-7. PubMed ID: 15784748
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Pair hidden Markov models on tree structures.
    Sakakibara Y
    Bioinformatics; 2003; 19 Suppl 1():i232-40. PubMed ID: 12855464
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Effective ambiguity checking in biosequence analysis.
    Reeder J; Steffen P; Giegerich R
    BMC Bioinformatics; 2005 Jun; 6():153. PubMed ID: 15967024
    [TBL] [Abstract][Full Text] [Related]  

  • 6. CONTRAfold: RNA secondary structure prediction without physics-based models.
    Do CB; Woods DA; Batzoglou S
    Bioinformatics; 2006 Jul; 22(14):e90-8. PubMed ID: 16873527
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Evolving stochastic context--free grammars for RNA secondary structure prediction.
    Wj Anderson J; Tataru P; Staines J; Hein J; Lyngsø R
    BMC Bioinformatics; 2012 May; 13():78. PubMed ID: 22559985
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A grammar based methodology for structural motif finding in ncRNA database search.
    Quest D; Tapprich W; Ali H
    Comput Syst Bioinformatics Conf; 2007; 6():215-25. PubMed ID: 17951826
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Introduction to stochastic context free grammars.
    Giegerich R
    Methods Mol Biol; 2014; 1097():85-106. PubMed ID: 24639156
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Stochastic modeling of RNA pseudoknotted structures: a grammatical approach.
    Cai L; Malmberg RL; Wu Y
    Bioinformatics; 2003; 19 Suppl 1():i66-73. PubMed ID: 12855439
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Stochastic context-free grammars for tRNA modeling.
    Sakakibara Y; Brown M; Hughey R; Mian IS; Sjölander K; Underwood RC; Haussler D
    Nucleic Acids Res; 1994 Nov; 22(23):5112-20. PubMed ID: 7800507
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SCFGs in RNA secondary structure prediction RNA secondary structure prediction: a hands-on approach.
    Sükösd Z; Andersen ES; Lyngsø R
    Methods Mol Biol; 2014; 1097():143-62. PubMed ID: 24639159
    [TBL] [Abstract][Full Text] [Related]  

  • 13. StatAlign 2.0: combining statistical alignment with RNA secondary structure prediction.
    Arunapuram P; Edvardsson I; Golden M; Anderson JW; Novák A; Sükösd Z; Hein J
    Bioinformatics; 2013 Mar; 29(5):654-5. PubMed ID: 23335014
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction.
    Dowell RD; Eddy SR
    BMC Bioinformatics; 2004 Jun; 5():71. PubMed ID: 15180907
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Accelerated probabilistic inference of RNA structure evolution.
    Holmes I
    BMC Bioinformatics; 2005 Mar; 6():73. PubMed ID: 15790387
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction.
    Reeder J; Giegerich R
    Bioinformatics; 2005 Sep; 21(17):3516-23. PubMed ID: 16020472
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Structural alignment of RNA with triple helix structure.
    Wong TK; Yiu SM
    J Comput Biol; 2012 Apr; 19(4):365-78. PubMed ID: 22468707
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars.
    Sükösd Z; Knudsen B; Vaerum M; Kjems J; Andersen ES
    BMC Bioinformatics; 2011 Apr; 12():103. PubMed ID: 21501497
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A memory efficient method for structure-based RNA multiple alignment.
    DeBlasio D; Bruand J; Zhang S
    IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(1):1-11. PubMed ID: 21576754
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Energy-based RNA consensus secondary structure prediction in multiple sequence alignments.
    Washietl S; Bernhart SH; Kellis M
    Methods Mol Biol; 2014; 1097():125-41. PubMed ID: 24639158
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.