BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

171 related articles for article (PubMed ID: 21235804)

  • 1. Revision history aware repositories of computational models of biological systems.
    Miller AK; Yu T; Britten R; Cooling MT; Lawson J; Cowan D; Garny A; Halstead MD; Hunter PJ; Nickerson DP; Nunns G; Wimalaratne SM; Nielsen PM
    BMC Bioinformatics; 2011 Jan; 12():22. PubMed ID: 21235804
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The Physiome Model Repository 2.
    Yu T; Lloyd CM; Nickerson DP; Cooling MT; Miller AK; Garny A; Terkildsen JR; Lawson J; Britten RD; Hunter PJ; Nielsen PM
    Bioinformatics; 2011 Mar; 27(5):743-4. PubMed ID: 21216774
    [TBL] [Abstract][Full Text] [Related]  

  • 3. An algorithm to detect and communicate the differences in computational models describing biological systems.
    Scharm M; Wolkenhauer O; Waltemath D
    Bioinformatics; 2016 Feb; 32(4):563-70. PubMed ID: 26490504
    [TBL] [Abstract][Full Text] [Related]  

  • 4. COMODI: an ontology to characterise differences in versions of computational models in biology.
    Scharm M; Waltemath D; Mendes P; Wolkenhauer O
    J Biomed Semantics; 2016 Jul; 7(1):46. PubMed ID: 27401413
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A Computational Workflow for the Automated Generation of Models of Genetic Designs.
    Misirli G; Nguyen T; McLaughlin JA; Vaidyanathan P; Jones TS; Densmore D; Myers C; Wipat A
    ACS Synth Biol; 2019 Jul; 8(7):1548-1559. PubMed ID: 29782151
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Modular modelling with Physiome standards.
    Cooling MT; Nickerson DP; Nielsen PM; Hunter PJ
    J Physiol; 2016 Dec; 594(23):6817-6831. PubMed ID: 27353233
    [TBL] [Abstract][Full Text] [Related]  

  • 7. CellML and associated tools and techniques.
    Garny A; Nickerson DP; Cooper J; Weber dos Santos R; Miller AK; McKeever S; Nielsen PM; Hunter PJ
    Philos Trans A Math Phys Eng Sci; 2008 Sep; 366(1878):3017-43. PubMed ID: 18579471
    [TBL] [Abstract][Full Text] [Related]  

  • 8. CellML metadata standards, associated tools and repositories.
    Beard DA; Britten R; Cooling MT; Garny A; Halstead MD; Hunter PJ; Lawson J; Lloyd CM; Marsh J; Miller A; Nickerson DP; Nielsen PM; Nomura T; Subramanium S; Wimalaratne SM; Yu T
    Philos Trans A Math Phys Eng Sci; 2009 May; 367(1895):1845-67. PubMed ID: 19380315
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Artistoo, a library to build, share, and explore simulations of cells and tissues in the web browser.
    Wortel IM; Textor J
    Elife; 2021 Apr; 10():. PubMed ID: 33835022
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Improving the reuse of computational models through version control.
    Waltemath D; Henkel R; Hälke R; Scharm M; Wolkenhauer O
    Bioinformatics; 2013 Mar; 29(6):742-8. PubMed ID: 23335018
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Model annotation and discovery with the Physiome Model Repository.
    Sarwar DM; Kalbasi R; Gennari JH; Carlson BE; Neal ML; Bono B; Atalag K; Hunter PJ; Nickerson DP
    BMC Bioinformatics; 2019 Sep; 20(1):457. PubMed ID: 31492098
    [TBL] [Abstract][Full Text] [Related]  

  • 12. OpenCMISS: a multi-physics & multi-scale computational infrastructure for the VPH/Physiome project.
    Bradley C; Bowery A; Britten R; Budelmann V; Camara O; Christie R; Cookson A; Frangi AF; Gamage TB; Heidlauf T; Krittian S; Ladd D; Little C; Mithraratne K; Nash M; Nickerson D; Nielsen P; Nordbø O; Omholt S; Pashaei A; Paterson D; Rajagopal V; Reeve A; Röhrle O; Safaei S; Sebastián R; Steghöfer M; Wu T; Yu T; Zhang H; Hunter P
    Prog Biophys Mol Biol; 2011 Oct; 107(1):32-47. PubMed ID: 21762717
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Standard virtual biological parts: a repository of modular modeling components for synthetic biology.
    Cooling MT; Rouilly V; Misirli G; Lawson J; Yu T; Hallinan J; Wipat A
    Bioinformatics; 2010 Apr; 26(7):925-31. PubMed ID: 20160009
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Bioinformatics, multiscale modeling and the IUPS Physiome Project.
    Hunter PJ; Crampin EJ; Nielsen PM
    Brief Bioinform; 2008 Jul; 9(4):333-43. PubMed ID: 18477639
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Vivarium: an interface and engine for integrative multiscale modeling in computational biology.
    Agmon E; Spangler RK; Skalnik CJ; Poole W; Peirce SM; Morrison JH; Covert MW
    Bioinformatics; 2022 Mar; 38(7):1972-1979. PubMed ID: 35134830
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The CellML Model Repository.
    Lloyd CM; Lawson JR; Hunter PJ; Nielsen PF
    Bioinformatics; 2008 Sep; 24(18):2122-3. PubMed ID: 18658182
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Evolution of computational models in BioModels Database and the Physiome Model Repository.
    Scharm M; Gebhardt T; Touré V; Bagnacani A; Salehzadeh-Yazdi A; Wolkenhauer O; Waltemath D
    BMC Syst Biol; 2018 Apr; 12(1):53. PubMed ID: 29650016
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A strategy to establish Food Safety Model Repositories.
    Plaza-Rodríguez C; Thoens C; Falenski A; Weiser AA; Appel B; Kaesbohrer A; Filter M
    Int J Food Microbiol; 2015 Jul; 204():81-90. PubMed ID: 25863339
    [TBL] [Abstract][Full Text] [Related]  

  • 19. CellML 2.0.
    Clerx M; Cooling MT; Cooper J; Garny A; Moyle K; Nickerson DP; Nielsen PMF; Sorby H
    J Integr Bioinform; 2020 Jul; 17(2-3):. PubMed ID: 32759406
    [TBL] [Abstract][Full Text] [Related]  

  • 20.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

    [Next]    [New Search]
    of 9.