459 related articles for article (PubMed ID: 21244844)
21. Neural representations of cryo-EM maps and a graph-based interpretation.
Ranno N; Si D
BMC Bioinformatics; 2022 Sep; 23(Suppl 3):397. PubMed ID: 36171544
[TBL] [Abstract][Full Text] [Related]
22. Improving the Accuracy of Fitted Atomic Models in Cryo-EM Density Maps of Protein Assemblies Using Evolutionary Information from Aligned Homologous Proteins.
Rakesh R; Srinivasan N
Methods Mol Biol; 2016; 1415():193-209. PubMed ID: 27115634
[TBL] [Abstract][Full Text] [Related]
23. Application of conformational space annealing to the protein structure modeling using cryo-EM maps.
Park J; Joung I; Joo K; Lee J
J Comput Chem; 2023 Nov; 44(30):2332-2346. PubMed ID: 37585026
[TBL] [Abstract][Full Text] [Related]
24. A fragment based method for modeling of protein segments into cryo-EM density maps.
Ismer J; Rose AS; Tiemann JKS; Hildebrand PW
BMC Bioinformatics; 2017 Nov; 18(1):475. PubMed ID: 29132296
[TBL] [Abstract][Full Text] [Related]
25. EMatch: discovery of high resolution structural homologues of protein domains in intermediate resolution cryo-EM maps.
Lasker K; Dror O; Shatsky M; Nussinov R; Wolfson HJ
IEEE/ACM Trans Comput Biol Bioinform; 2007; 4(1):28-39. PubMed ID: 17277411
[TBL] [Abstract][Full Text] [Related]
26. EMatch: an efficient method for aligning atomic resolution subunits into intermediate-resolution cryo-EM maps of large macromolecular assemblies.
Dror O; Lasker K; Nussinov R; Wolfson H
Acta Crystallogr D Biol Crystallogr; 2007 Jan; 63(Pt 1):42-9. PubMed ID: 17164525
[TBL] [Abstract][Full Text] [Related]
27. Cryo_fit: Democratization of flexible fitting for cryo-EM.
Kim DN; Moriarty NW; Kirmizialtin S; Afonine PV; Poon B; Sobolev OV; Adams PD; Sanbonmatsu K
J Struct Biol; 2019 Oct; 208(1):1-6. PubMed ID: 31279069
[TBL] [Abstract][Full Text] [Related]
28. Numerical geometry of map and model assessment.
Wriggers W; He J
J Struct Biol; 2015 Nov; 192(2):255-61. PubMed ID: 26416532
[TBL] [Abstract][Full Text] [Related]
29. Biased coarse-grained molecular dynamics simulation approach for flexible fitting of X-ray structure into cryo electron microscopy maps.
Grubisic I; Shokhirev MN; Orzechowski M; Miyashita O; Tama F
J Struct Biol; 2010 Jan; 169(1):95-105. PubMed ID: 19800974
[TBL] [Abstract][Full Text] [Related]
30. Computational methods for constructing protein structure models from 3D electron microscopy maps.
Esquivel-Rodríguez J; Kihara D
J Struct Biol; 2013 Oct; 184(1):93-102. PubMed ID: 23796504
[TBL] [Abstract][Full Text] [Related]
31. Deep Learning for Validating and Estimating Resolution of Cryo-Electron Microscopy Density Maps
Avramov TK; Vyenielo D; Gomez-Blanco J; Adinarayanan S; Vargas J; Si D
Molecules; 2019 Mar; 24(6):. PubMed ID: 30917528
[TBL] [Abstract][Full Text] [Related]
32. DEMO-EM2: assembling protein complex structures from cryo-EM maps through intertwined chain and domain fitting.
Zhang Z; Cai Y; Zhang B; Zheng W; Freddolino L; Zhang G; Zhou X
Brief Bioinform; 2024 Jan; 25(2):. PubMed ID: 38517699
[TBL] [Abstract][Full Text] [Related]
33. An Investigation of Atomic Structures Derived from X-ray Crystallography and Cryo-Electron Microscopy Using Distal Blocks of Side-Chains.
Chen L; He J; Sazzed S; Walker R
Molecules; 2018 Mar; 23(3):. PubMed ID: 29518032
[TBL] [Abstract][Full Text] [Related]
34. The accuracy of protein models automatically built into cryo-EM maps with ARP/wARP.
Chojnowski G; Sobolev E; Heuser P; Lamzin VS
Acta Crystallogr D Struct Biol; 2021 Feb; 77(Pt 2):142-150. PubMed ID: 33559604
[TBL] [Abstract][Full Text] [Related]
35. Protein secondary structure detection in intermediate-resolution cryo-EM maps using deep learning.
Maddhuri Venkata Subramaniya SR; Terashi G; Kihara D
Nat Methods; 2019 Sep; 16(9):911-917. PubMed ID: 31358979
[TBL] [Abstract][Full Text] [Related]
36. Protein-Protein Modeling Using Cryo-EM Restraints.
Trellet M; van Zundert G; Bonvin AMJJ
Methods Mol Biol; 2020; 2112():145-162. PubMed ID: 32006284
[TBL] [Abstract][Full Text] [Related]
37. Cryo-electron microscopy modeling by the molecular dynamics flexible fitting method.
Chan KY; Trabuco LG; Schreiner E; Schulten K
Biopolymers; 2012 Sep; 97(9):678-86. PubMed ID: 22696404
[TBL] [Abstract][Full Text] [Related]
38. Gorgon and pathwalking: macromolecular modeling tools for subnanometer resolution density maps.
Baker ML; Baker MR; Hryc CF; Ju T; Chiu W
Biopolymers; 2012 Sep; 97(9):655-68. PubMed ID: 22696403
[TBL] [Abstract][Full Text] [Related]
39. Accurate flexible refinement of atomic models against medium-resolution cryo-EM maps using damped dynamics.
Kovacs JA; Galkin VE; Wriggers W
BMC Struct Biol; 2018 Sep; 18(1):12. PubMed ID: 30219048
[TBL] [Abstract][Full Text] [Related]
40. Using cryo-electron microscopy maps for X-ray structure determination of homologues.
Zeng L; Ding W; Hao Q
Acta Crystallogr D Struct Biol; 2020 Jan; 76(Pt 1):63-72. PubMed ID: 31909744
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]