335 related articles for article (PubMed ID: 21245279)
1. Efficient storage of high throughput DNA sequencing data using reference-based compression.
Hsi-Yang Fritz M; Leinonen R; Cochrane G; Birney E
Genome Res; 2011 May; 21(5):734-40. PubMed ID: 21245279
[TBL] [Abstract][Full Text] [Related]
2. On-Demand Indexing for Referential Compression of DNA Sequences.
Alves F; Cogo V; Wandelt S; Leser U; Bessani A
PLoS One; 2015; 10(7):e0132460. PubMed ID: 26146838
[TBL] [Abstract][Full Text] [Related]
3. Advances in high throughput DNA sequence data compression.
Sardaraz M; Tahir M; Ikram AA
J Bioinform Comput Biol; 2016 Jun; 14(3):1630002. PubMed ID: 26846812
[TBL] [Abstract][Full Text] [Related]
4. Compression of genomic sequencing reads via hash-based reordering: algorithm and analysis.
Chandak S; Tatwawadi K; Weissman T
Bioinformatics; 2018 Feb; 34(4):558-567. PubMed ID: 29444237
[TBL] [Abstract][Full Text] [Related]
5. ERGC: an efficient referential genome compression algorithm.
Saha S; Rajasekaran S
Bioinformatics; 2015 Nov; 31(21):3468-75. PubMed ID: 26139636
[TBL] [Abstract][Full Text] [Related]
6. SeqCompress: an algorithm for biological sequence compression.
Sardaraz M; Tahir M; Ikram AA; Bajwa H
Genomics; 2014 Oct; 104(4):225-8. PubMed ID: 25173568
[TBL] [Abstract][Full Text] [Related]
7. iDoComp: a compression scheme for assembled genomes.
Ochoa I; Hernaez M; Weissman T
Bioinformatics; 2015 Mar; 31(5):626-33. PubMed ID: 25344501
[TBL] [Abstract][Full Text] [Related]
8. FaStore: a space-saving solution for raw sequencing data.
Roguski L; Ochoa I; Hernaez M; Deorowicz S
Bioinformatics; 2018 Aug; 34(16):2748-2756. PubMed ID: 29617939
[TBL] [Abstract][Full Text] [Related]
9. GReEn: a tool for efficient compression of genome resequencing data.
Pinho AJ; Pratas D; Garcia SP
Nucleic Acids Res; 2012 Feb; 40(4):e27. PubMed ID: 22139935
[TBL] [Abstract][Full Text] [Related]
10. AFRESh: an adaptive framework for compression of reads and assembled sequences with random access functionality.
Paridaens T; Van Wallendael G; De Neve W; Lambert P
Bioinformatics; 2017 May; 33(10):1464-1472. PubMed ID: 28057687
[TBL] [Abstract][Full Text] [Related]
11. Data structures and compression algorithms for genomic sequence data.
Brandon MC; Wallace DC; Baldi P
Bioinformatics; 2009 Jul; 25(14):1731-8. PubMed ID: 19447783
[TBL] [Abstract][Full Text] [Related]
12. SCALCE: boosting sequence compression algorithms using locally consistent encoding.
Hach F; Numanagic I; Alkan C; Sahinalp SC
Bioinformatics; 2012 Dec; 28(23):3051-7. PubMed ID: 23047557
[TBL] [Abstract][Full Text] [Related]
13. SRComp: short read sequence compression using burstsort and Elias omega coding.
Selva JJ; Chen X
PLoS One; 2013; 8(12):e81414. PubMed ID: 24349065
[TBL] [Abstract][Full Text] [Related]
14. A compression method for DNA.
Du S; Li J; Bian N
PLoS One; 2020; 15(11):e0238220. PubMed ID: 33237908
[TBL] [Abstract][Full Text] [Related]
15. Toward a Better Compression for DNA Sequences Using Huffman Encoding.
Al-Okaily A; Almarri B; Al Yami S; Huang CH
J Comput Biol; 2017 Apr; 24(4):280-288. PubMed ID: 27960065
[TBL] [Abstract][Full Text] [Related]
16. Algorithms designed for compressed-gene-data transformation among gene banks with different references.
Luo Q; Guo C; Zhang YJ; Cai Y; Liu G
BMC Bioinformatics; 2018 Jun; 19(1):230. PubMed ID: 29914357
[TBL] [Abstract][Full Text] [Related]
17. Compression of next-generation sequencing quality scores using memetic algorithm.
Zhou J; Ji Z; Zhu Z; He S
BMC Bioinformatics; 2014; 15 Suppl 15(Suppl 15):S10. PubMed ID: 25474747
[TBL] [Abstract][Full Text] [Related]
18. Dynamic Alignment-Free and Reference-Free Read Compression.
Holley G; Wittler R; Stoye J; Hach F
J Comput Biol; 2018 Jul; 25(7):825-836. PubMed ID: 30011247
[TBL] [Abstract][Full Text] [Related]
19. Fast lossless compression via cascading Bloom filters.
Rozov R; Shamir R; Halperin E
BMC Bioinformatics; 2014; 15 Suppl 9(Suppl 9):S7. PubMed ID: 25252952
[TBL] [Abstract][Full Text] [Related]
20. LW-FQZip 2: a parallelized reference-based compression of FASTQ files.
Huang ZA; Wen Z; Deng Q; Chu Y; Sun Y; Zhu Z
BMC Bioinformatics; 2017 Mar; 18(1):179. PubMed ID: 28320326
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]