BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

127 related articles for article (PubMed ID: 21264334)

  • 1. PoolHap: inferring haplotype frequencies from pooled samples by next generation sequencing.
    Long Q; Jeffares DC; Zhang Q; Ye K; Nizhynska V; Ning Z; Tyler-Smith C; Nordborg M
    PLoS One; 2011 Jan; 6(1):e15292. PubMed ID: 21264334
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Accurate estimation of haplotype frequency from pooled sequencing data and cost-effective identification of rare haplotype carriers by overlapping pool sequencing.
    Cao CC; Sun X
    Bioinformatics; 2015 Feb; 31(4):515-22. PubMed ID: 25304780
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Ehapp2: Estimate haplotype frequencies from pooled sequencing data with prior database information.
    Cao CC; Sun X
    J Bioinform Comput Biol; 2016 Aug; 14(4):1650017. PubMed ID: 27216711
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Accurate Allele Frequencies from Ultra-low Coverage Pool-Seq Samples in Evolve-and-Resequence Experiments.
    Tilk S; Bergland A; Goodman A; Schmidt P; Petrov D; Greenblum S
    G3 (Bethesda); 2019 Dec; 9(12):4159-4168. PubMed ID: 31636085
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Computational Haplotype Inference from Pooled Samples.
    Long Q
    Methods Mol Biol; 2017; 1551():309-319. PubMed ID: 28138852
    [TBL] [Abstract][Full Text] [Related]  

  • 6. PDA: Pooled DNA analyzer.
    Yang HC; Pan CC; Lin CY; Fann CS
    BMC Bioinformatics; 2006 Apr; 7():233. PubMed ID: 16643673
    [TBL] [Abstract][Full Text] [Related]  

  • 7. How to optimize the precision of allele and haplotype frequency estimates using pooled-sequencing data.
    Rode NO; Holtz Y; Loridon K; Santoni S; Ronfort J; Gay L
    Mol Ecol Resour; 2018 Mar; 18(2):194-203. PubMed ID: 28977733
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The next generation of molecular markers from massively parallel sequencing of pooled DNA samples.
    Futschik A; Schlötterer C
    Genetics; 2010 Sep; 186(1):207-18. PubMed ID: 20457880
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Pool-hmm: a Python program for estimating the allele frequency spectrum and detecting selective sweeps from next generation sequencing of pooled samples.
    Boitard S; Kofler R; Françoise P; Robelin D; Schlötterer C; Futschik A
    Mol Ecol Resour; 2013 Mar; 13(2):337-40. PubMed ID: 23311589
    [TBL] [Abstract][Full Text] [Related]  

  • 10. MixClone: a mixture model for inferring tumor subclonal populations.
    Li Y; Xie X
    BMC Genomics; 2015; 16 Suppl 2(Suppl 2):S1. PubMed ID: 25707430
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Mutant-bin: unsupervised haplotype estimation of viral population diversity without reference genome.
    Prabhakara S; Malhotra R; Acharya R; Poss M
    J Comput Biol; 2013 Jun; 20(6):453-63. PubMed ID: 23718149
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Strobe sequence design for haplotype assembly.
    Lo C; Bashir A; Bansal V; Bafna V
    BMC Bioinformatics; 2011 Feb; 12 Suppl 1(Suppl 1):S24. PubMed ID: 21342554
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Identification of an EMS-induced causal mutation in a gene required for boron-mediated root development by low-coverage genome re-sequencing in Arabidopsis.
    Tabata R; Kamiya T; Shigenobu S; Yamaguchi K; Yamada M; Hasebe M; Fujiwara T; Sawa S
    Plant Signal Behav; 2013 Jan; 8(1):e22534. PubMed ID: 23104114
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Identification of EMS-induced causal mutations in Arabidopsis thaliana by next-generation sequencing.
    Uchida N; Sakamoto T; Tasaka M; Kurata T
    Methods Mol Biol; 2014; 1062():259-70. PubMed ID: 24057371
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Maximum likelihood estimation of frequencies of known haplotypes from pooled sequence data.
    Kessner D; Turner TL; Novembre J
    Mol Biol Evol; 2013 May; 30(5):1145-58. PubMed ID: 23364324
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Heap: a highly sensitive and accurate SNP detection tool for low-coverage high-throughput sequencing data.
    Kobayashi M; Ohyanagi H; Takanashi H; Asano S; Kudo T; Kajiya-Kanegae H; Nagano AJ; Tainaka H; Tokunaga T; Sazuka T; Iwata H; Tsutsumi N; Yano K
    DNA Res; 2017 Aug; 24(4):397-405. PubMed ID: 28498906
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Multi-centre evaluation of a comprehensive preimplantation genetic test through haplotyping-by-sequencing.
    Masset H; Zamani Esteki M; Dimitriadou E; Dreesen J; Debrock S; Derhaag J; Derks K; Destouni A; Drüsedau M; Meekels J; Melotte C; Peeraer K; Tšuiko O; van Uum C; Allemeersch J; Devogelaere B; François KO; Happe S; Lorson D; Richards RL; Theuns J; Brunner H; de Die-Smulders C; Voet T; Paulussen A; Coonen E; Vermeesch JR
    Hum Reprod; 2019 Aug; 34(8):1608-1619. PubMed ID: 31348829
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA.
    Holt KE; Teo YY; Li H; Nair S; Dougan G; Wain J; Parkhill J
    Bioinformatics; 2009 Aug; 25(16):2074-5. PubMed ID: 19497932
    [TBL] [Abstract][Full Text] [Related]  

  • 19. PoooL: an efficient method for estimating haplotype frequencies from large DNA pools.
    Zhang H; Yang HC; Yang Y
    Bioinformatics; 2008 Sep; 24(17):1942-8. PubMed ID: 18573795
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A Fosmid Pool-Based Next Generation Sequencing Approach to Haplotype-Resolve Whole Genomes.
    Suk EK; Schulz S; Mentrup B; Huebsch T; Duitama J; Hoehe MR
    Methods Mol Biol; 2017; 1551():223-269. PubMed ID: 28138850
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.