313 related articles for article (PubMed ID: 21281493)
1. RAIphy: phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles.
Nalbantoglu OU; Way SF; Hinrichs SH; Sayood K
BMC Bioinformatics; 2011 Jan; 12():41. PubMed ID: 21281493
[TBL] [Abstract][Full Text] [Related]
2. MetaCluster-TA: taxonomic annotation for metagenomic data based on assembly-assisted binning.
Wang Y; Leung H; Yiu S; Chin F
BMC Genomics; 2014; 15 Suppl 1(Suppl 1):S12. PubMed ID: 24564377
[TBL] [Abstract][Full Text] [Related]
3. Classifying short genomic fragments from novel lineages using composition and homology.
Parks DH; MacDonald NJ; Beiko RG
BMC Bioinformatics; 2011 Aug; 12():328. PubMed ID: 21827705
[TBL] [Abstract][Full Text] [Related]
4. TACOA: taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach.
Diaz NN; Krause L; Goesmann A; Niehaus K; Nattkemper TW
BMC Bioinformatics; 2009 Feb; 10():56. PubMed ID: 19210774
[TBL] [Abstract][Full Text] [Related]
5. MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs.
Huson DH; Albrecht B; Bağcı C; Bessarab I; Górska A; Jolic D; Williams RBH
Biol Direct; 2018 Apr; 13(1):6. PubMed ID: 29678199
[TBL] [Abstract][Full Text] [Related]
6. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
[TBL] [Abstract][Full Text] [Related]
7. Improving contig binning of metagenomic data using [Formula: see text] oligonucleotide frequency dissimilarity.
Wang Y; Wang K; Lu YY; Sun F
BMC Bioinformatics; 2017 Sep; 18(1):425. PubMed ID: 28931373
[TBL] [Abstract][Full Text] [Related]
8. TWARIT: an extremely rapid and efficient approach for phylogenetic classification of metagenomic sequences.
Reddy RM; Mohammed MH; Mande SS
Gene; 2012 Sep; 505(2):259-65. PubMed ID: 22710135
[TBL] [Abstract][Full Text] [Related]
9. Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes.
Papudeshi B; Haggerty JM; Doane M; Morris MM; Walsh K; Beattie DT; Pande D; Zaeri P; Silva GGZ; Thompson F; Edwards RA; Dinsdale EA
BMC Genomics; 2017 Nov; 18(1):915. PubMed ID: 29183281
[TBL] [Abstract][Full Text] [Related]
10. Integrating taxonomic signals from MAGs and contigs improves read annotation and taxonomic profiling of metagenomes.
Hauptfeld E; Pappas N; van Iwaarden S; Snoek BL; Aldas-Vargas A; Dutilh BE; von Meijenfeldt FAB
Nat Commun; 2024 Apr; 15(1):3373. PubMed ID: 38643272
[TBL] [Abstract][Full Text] [Related]
11. Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools.
Rotimi AM; Pierneef R; Reva ON
BMC Bioinformatics; 2018 Aug; 19(1):309. PubMed ID: 30165813
[TBL] [Abstract][Full Text] [Related]
12. Comparison of different assembly and annotation tools on analysis of simulated viral metagenomic communities in the gut.
Vázquez-Castellanos JF; García-López R; Pérez-Brocal V; Pignatelli M; Moya A
BMC Genomics; 2014 Jan; 15():37. PubMed ID: 24438450
[TBL] [Abstract][Full Text] [Related]
13. CoMet: a workflow using contig coverage and composition for binning a metagenomic sample with high precision.
Herath D; Tang SL; Tandon K; Ackland D; Halgamuge SK
BMC Bioinformatics; 2017 Dec; 18(Suppl 16):571. PubMed ID: 29297295
[TBL] [Abstract][Full Text] [Related]
14. Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data.
Frank JA; Pan Y; Tooming-Klunderud A; Eijsink VGH; McHardy AC; Nederbragt AJ; Pope PB
Sci Rep; 2016 May; 6():25373. PubMed ID: 27156482
[TBL] [Abstract][Full Text] [Related]
15. Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences.
Liu B; Gibbons T; Ghodsi M; Treangen T; Pop M
BMC Genomics; 2011; 12 Suppl 2(Suppl 2):S4. PubMed ID: 21989143
[TBL] [Abstract][Full Text] [Related]
16. Accurate Binning of Metagenomic Contigs Using Composition, Coverage, and Assembly Graphs.
Mallawaarachchi V; Lin Y
J Comput Biol; 2022 Dec; 29(12):1357-1376. PubMed ID: 36367700
[TBL] [Abstract][Full Text] [Related]
17. Rapid identification of high-confidence taxonomic assignments for metagenomic data.
MacDonald NJ; Parks DH; Beiko RG
Nucleic Acids Res; 2012 Aug; 40(14):e111. PubMed ID: 22532608
[TBL] [Abstract][Full Text] [Related]
18. Exploiting topic modeling to boost metagenomic reads binning.
Zhang R; Cheng Z; Guan J; Zhou S
BMC Bioinformatics; 2015; 16 Suppl 5(Suppl 5):S2. PubMed ID: 25859745
[TBL] [Abstract][Full Text] [Related]
19. Composition-based classification of short metagenomic sequences elucidates the landscapes of taxonomic and functional enrichment of microorganisms.
Liu J; Wang H; Yang H; Zhang Y; Wang J; Zhao F; Qi J
Nucleic Acids Res; 2013 Jan; 41(1):e3. PubMed ID: 22941634
[TBL] [Abstract][Full Text] [Related]
20. VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data.
Ren J; Ahlgren NA; Lu YY; Fuhrman JA; Sun F
Microbiome; 2017 Jul; 5(1):69. PubMed ID: 28683828
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
