300 related articles for article (PubMed ID: 21295369)
1. Genome-wide transcription factor binding: beyond direct target regulation.
MacQuarrie KL; Fong AP; Morse RH; Tapscott SJ
Trends Genet; 2011 Apr; 27(4):141-8. PubMed ID: 21295369
[TBL] [Abstract][Full Text] [Related]
2. Integrative analysis of ChIP-chip and ChIP-seq dataset.
Zhu LJ
Methods Mol Biol; 2013; 1067():105-24. PubMed ID: 23975789
[TBL] [Abstract][Full Text] [Related]
3. ChIP-Seq Data Analysis to Define Transcriptional Regulatory Networks.
Pavesi G
Adv Biochem Eng Biotechnol; 2017; 160():1-14. PubMed ID: 28070596
[TBL] [Abstract][Full Text] [Related]
4. ChIP-ping the branches of the tree: functional genomics and the evolution of eukaryotic gene regulation.
Marinov GK; Kundaje A
Brief Funct Genomics; 2018 Mar; 17(2):116-137. PubMed ID: 29529131
[TBL] [Abstract][Full Text] [Related]
5. Role of ChIP-seq in the discovery of transcription factor binding sites, differential gene regulation mechanism, epigenetic marks and beyond.
Mundade R; Ozer HG; Wei H; Prabhu L; Lu T
Cell Cycle; 2014; 13(18):2847-52. PubMed ID: 25486472
[TBL] [Abstract][Full Text] [Related]
6. A widespread distribution of genomic CeMyoD binding sites revealed and cross validated by ChIP-Chip and ChIP-Seq techniques.
Lei H; Fukushige T; Niu W; Sarov M; Reinke V; Krause M
PLoS One; 2010 Dec; 5(12):e15898. PubMed ID: 21209968
[TBL] [Abstract][Full Text] [Related]
7. Statistics of protein-DNA binding and the total number of binding sites for a transcription factor in the mammalian genome.
Kuznetsov VA; Singh O; Jenjaroenpun P
BMC Genomics; 2010 Feb; 11 Suppl 1(Suppl 1):S12. PubMed ID: 20158869
[TBL] [Abstract][Full Text] [Related]
8. Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans.
Niu W; Lu ZJ; Zhong M; Sarov M; Murray JI; Brdlik CM; Janette J; Chen C; Alves P; Preston E; Slightham C; Jiang L; Hyman AA; Kim SK; Waterston RH; Gerstein M; Snyder M; Reinke V
Genome Res; 2011 Feb; 21(2):245-54. PubMed ID: 21177963
[TBL] [Abstract][Full Text] [Related]
9. A resource for characterizing genome-wide binding and putative target genes of transcription factors expressed during secondary growth and wood formation in Populus.
Liu L; Ramsay T; Zinkgraf M; Sundell D; Street NR; Filkov V; Groover A
Plant J; 2015 Jun; 82(5):887-98. PubMed ID: 25903933
[TBL] [Abstract][Full Text] [Related]
10. De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets.
Niu M; Tabari ES; Su Z
BMC Genomics; 2014 Dec; 15():1047. PubMed ID: 25442502
[TBL] [Abstract][Full Text] [Related]
11. ChIP-Seq using high-throughput DNA sequencing for genome-wide identification of transcription factor binding sites.
Lefrançois P; Zheng W; Snyder M
Methods Enzymol; 2010; 470():77-104. PubMed ID: 20946807
[TBL] [Abstract][Full Text] [Related]
12. A compendium of genome-wide hematopoietic transcription factor maps supports the identification of gene regulatory control mechanisms.
Hannah R; Joshi A; Wilson NK; Kinston S; Göttgens B
Exp Hematol; 2011 May; 39(5):531-41. PubMed ID: 21338655
[TBL] [Abstract][Full Text] [Related]
13. Genome-wide profiling of transcription factor binding and epigenetic marks in adipocytes by ChIP-seq.
Nielsen R; Mandrup S
Methods Enzymol; 2014; 537():261-79. PubMed ID: 24480351
[TBL] [Abstract][Full Text] [Related]
14. Visualizing and characterizing in vivo DNA-binding events and direct target genes of plant transcription factors.
Muiño JM; Angenent GC; Kaufmann K
Methods Mol Biol; 2011; 754():293-305. PubMed ID: 21720960
[TBL] [Abstract][Full Text] [Related]
15. Characterization of genome-wide binding of NF-κB in TNFα-stimulated HeLa cells.
Xing Y; Yang Y; Zhou F; Wang J
Gene; 2013 Sep; 526(2):142-9. PubMed ID: 23688556
[TBL] [Abstract][Full Text] [Related]
16. Genome Wide Approaches to Identify Protein-DNA Interactions.
Ma T; Ye Z; Wang L
Curr Med Chem; 2019; 26(42):7641-7654. PubMed ID: 29848263
[TBL] [Abstract][Full Text] [Related]
17. Genome-Wide Identification of Transcription Factor-Binding Sites in Quiescent Adult Neural Stem Cells.
Mukherjee S; Hsieh J
Methods Mol Biol; 2018; 1686():265-286. PubMed ID: 29030827
[TBL] [Abstract][Full Text] [Related]
18. Statistical methods in integrative analysis for gene regulatory modules.
Zeng L; Wu J; Xie J
Stat Appl Genet Mol Biol; 2008; 7(1):Article 28. PubMed ID: 18976224
[TBL] [Abstract][Full Text] [Related]
19. Genome-wide identification of Bacillus subtilis Zur-binding sites associated with a Zur box expands its known regulatory network.
Prestel E; Noirot P; Auger S
BMC Microbiol; 2015 Feb; 15(1):13. PubMed ID: 25649915
[TBL] [Abstract][Full Text] [Related]
20. Genome-wide analysis of protein-DNA interactions.
Kim TH; Ren B
Annu Rev Genomics Hum Genet; 2006; 7():81-102. PubMed ID: 16722805
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
