302 related articles for article (PubMed ID: 21296765)
1. Genome size and transposable element content as determined by high-throughput sequencing in maize and Zea luxurians.
Tenaillon MI; Hufford MB; Gaut BS; Ross-Ibarra J
Genome Biol Evol; 2011; 3():219-29. PubMed ID: 21296765
[TBL] [Abstract][Full Text] [Related]
2. Dynamic Patterns of Transcript Abundance of Transposable Element Families in Maize.
Anderson SN; Stitzer MC; Zhou P; Ross-Ibarra J; Hirsch CD; Springer NM
G3 (Bethesda); 2019 Nov; 9(11):3673-3682. PubMed ID: 31506319
[TBL] [Abstract][Full Text] [Related]
3. Genetic and epigenetic variation in transposable element expression responses to abiotic stress in maize.
Liang Z; Anderson SN; Noshay JM; Crisp PA; Enders TA; Springer NM
Plant Physiol; 2021 May; 186(1):420-433. PubMed ID: 33591319
[TBL] [Abstract][Full Text] [Related]
4. Transposable elements contribute to dynamic genome content in maize.
Anderson SN; Stitzer MC; Brohammer AB; Zhou P; Noshay JM; O'Connor CH; Hirsch CD; Ross-Ibarra J; Hirsch CN; Springer NM
Plant J; 2019 Dec; 100(5):1052-1065. PubMed ID: 31381222
[TBL] [Abstract][Full Text] [Related]
5. Three groups of transposable elements with contrasting copy number dynamics and host responses in the maize (Zea mays ssp. mays) genome.
Diez CM; Meca E; Tenaillon MI; Gaut BS
PLoS Genet; 2014 Apr; 10(4):e1004298. PubMed ID: 24743518
[TBL] [Abstract][Full Text] [Related]
6. Assessing the regulatory potential of transposable elements using chromatin accessibility profiles of maize transposons.
Noshay JM; Marand AP; Anderson SN; Zhou P; Mejia Guerra MK; Lu Z; O'Connor CH; Crisp PA; Hirsch CN; Schmitz RJ; Springer NM
Genetics; 2021 Mar; 217(1):1-13. PubMed ID: 33683350
[TBL] [Abstract][Full Text] [Related]
7. Monitoring the interplay between transposable element families and DNA methylation in maize.
Noshay JM; Anderson SN; Zhou P; Ji L; Ricci W; Lu Z; Stitzer MC; Crisp PA; Hirsch CN; Zhang X; Schmitz RJ; Springer NM
PLoS Genet; 2019 Sep; 15(9):e1008291. PubMed ID: 31498837
[TBL] [Abstract][Full Text] [Related]
8. Whole-genome variation of transposable element insertions in a maize diversity panel.
Qiu Y; O'Connor CH; Della Coletta R; Renk JS; Monnahan PJ; Noshay JM; Liang Z; Gilbert A; Anderson SN; McGaugh SE; Springer NM; Hirsch CN
G3 (Bethesda); 2021 Sep; 11(10):. PubMed ID: 34568911
[TBL] [Abstract][Full Text] [Related]
9. Long-Read cDNA Sequencing Enables a "Gene-Like" Transcript Annotation of Transposable Elements.
Panda K; Slotkin RK
Plant Cell; 2020 Sep; 32(9):2687-2698. PubMed ID: 32647069
[TBL] [Abstract][Full Text] [Related]
10. The genomic ecosystem of transposable elements in maize.
Stitzer MC; Anderson SN; Springer NM; Ross-Ibarra J
PLoS Genet; 2021 Oct; 17(10):e1009768. PubMed ID: 34648488
[TBL] [Abstract][Full Text] [Related]
11. Maize RNA PolIV affects the expression of genes with nearby TE insertions and has a genome-wide repressive impact on transcription.
Forestan C; Farinati S; Aiese Cigliano R; Lunardon A; Sanseverino W; Varotto S
BMC Plant Biol; 2017 Oct; 17(1):161. PubMed ID: 29025411
[TBL] [Abstract][Full Text] [Related]
12. Transposome: a toolkit for annotation of transposable element families from unassembled sequence reads.
Staton SE; Burke JM
Bioinformatics; 2015 Jun; 31(11):1827-9. PubMed ID: 25644271
[TBL] [Abstract][Full Text] [Related]
13. Transposon fingerprinting using low coverage whole genome shotgun sequencing in cacao (Theobroma cacao L.) and related species.
Sveinsson S; Gill N; Kane NC; Cronk Q
BMC Genomics; 2013 Jul; 14():502. PubMed ID: 23883295
[TBL] [Abstract][Full Text] [Related]
14. Transposable elements contribute to activation of maize genes in response to abiotic stress.
Makarevitch I; Waters AJ; West PT; Stitzer M; Hirsch CN; Ross-Ibarra J; Springer NM
PLoS Genet; 2015 Jan; 11(1):e1004915. PubMed ID: 25569788
[TBL] [Abstract][Full Text] [Related]
15. TIR-Learner, a New Ensemble Method for TIR Transposable Element Annotation, Provides Evidence for Abundant New Transposable Elements in the Maize Genome.
Su W; Gu X; Peterson T
Mol Plant; 2019 Mar; 12(3):447-460. PubMed ID: 30802553
[TBL] [Abstract][Full Text] [Related]
16. TEnest: automated chronological annotation and visualization of nested plant transposable elements.
Kronmiller BA; Wise RP
Plant Physiol; 2008 Jan; 146(1):45-59. PubMed ID: 18032588
[TBL] [Abstract][Full Text] [Related]
17. Combined analysis of transposable elements and structural variation in maize genomes reveals genome contraction outpaces expansion.
Munasinghe M; Read A; Stitzer MC; Song B; Menard CC; Ma KY; Brandvain Y; Hirsch CN; Springer N
PLoS Genet; 2023 Dec; 19(12):e1011086. PubMed ID: 38134220
[TBL] [Abstract][Full Text] [Related]
18. Transposable elements (TEs) contribute to stress-related long intergenic noncoding RNAs in plants.
Wang D; Qu Z; Yang L; Zhang Q; Liu ZH; Do T; Adelson DL; Wang ZY; Searle I; Zhu JK
Plant J; 2017 Apr; 90(1):133-146. PubMed ID: 28106309
[TBL] [Abstract][Full Text] [Related]
19. Rice transposable elements are characterized by various methylation environments in the genome.
Takata M; Kiyohara A; Takasu A; Kishima Y; Ohtsubo H; Sano Y
BMC Genomics; 2007 Dec; 8():469. PubMed ID: 18093338
[TBL] [Abstract][Full Text] [Related]
20. Genome-wide high-resolution mapping of DNA methylation identifies epigenetic variation across embryo and endosperm in Maize (Zea may).
Wang P; Xia H; Zhang Y; Zhao S; Zhao C; Hou L; Li C; Li A; Ma C; Wang X
BMC Genomics; 2015 Jan; 16(1):21. PubMed ID: 25612809
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]