168 related articles for article (PubMed ID: 21303862)
1. SBML-PET-MPI: a parallel parameter estimation tool for Systems Biology Markup Language based models.
Zi Z
Bioinformatics; 2011 Apr; 27(7):1028-9. PubMed ID: 21303862
[TBL] [Abstract][Full Text] [Related]
2. SBML-PET: a Systems Biology Markup Language-based parameter estimation tool.
Zi Z; Klipp E
Bioinformatics; 2006 Nov; 22(21):2704-5. PubMed ID: 16926221
[TBL] [Abstract][Full Text] [Related]
3. SBML-SAT: a systems biology markup language (SBML) based sensitivity analysis tool.
Zi Z; Zheng Y; Rundell AE; Klipp E
BMC Bioinformatics; 2008 Aug; 9():342. PubMed ID: 18706080
[TBL] [Abstract][Full Text] [Related]
4. LibSBML: an API library for SBML.
Bornstein BJ; Keating SM; Jouraku A; Hucka M
Bioinformatics; 2008 Mar; 24(6):880-1. PubMed ID: 18252737
[TBL] [Abstract][Full Text] [Related]
5. SBMLToolbox: an SBML toolbox for MATLAB users.
Keating SM; Bornstein BJ; Finney A; Hucka M
Bioinformatics; 2006 May; 22(10):1275-7. PubMed ID: 16574696
[TBL] [Abstract][Full Text] [Related]
6. SBML export interface for the systems biology toolbox for MATLAB.
Schmidt H; Drews G; Vera J; Wolkenhauer O
Bioinformatics; 2007 May; 23(10):1297-8. PubMed ID: 17384017
[TBL] [Abstract][Full Text] [Related]
7. MathSBML: a package for manipulating SBML-based biological models.
Shapiro BE; Hucka M; Finney A; Doyle J
Bioinformatics; 2004 Nov; 20(16):2829-31. PubMed ID: 15087311
[TBL] [Abstract][Full Text] [Related]
8. A parallel algorithm to compute chemical organizations in biological networks.
Centler F; Kaleta C; Speroni di Fenizio P; Dittrich P
Bioinformatics; 2010 Jul; 26(14):1788-9. PubMed ID: 20501552
[TBL] [Abstract][Full Text] [Related]
9. SBMLeditor: effective creation of models in the Systems Biology Markup language (SBML).
Rodriguez N; Donizelli M; Le Novère N
BMC Bioinformatics; 2007 Mar; 8():79. PubMed ID: 17341299
[TBL] [Abstract][Full Text] [Related]
10. JSBML: a flexible Java library for working with SBML.
Dräger A; Rodriguez N; Dumousseau M; Dörr A; Wrzodek C; Le Novère N; Zell A; Hucka M
Bioinformatics; 2011 Aug; 27(15):2167-8. PubMed ID: 21697129
[TBL] [Abstract][Full Text] [Related]
11. Qualitative translation of relations from BioPAX to SBML qual.
Büchel F; Wrzodek C; Mittag F; Dräger A; Eichner J; Rodriguez N; Le Novère N; Zell A
Bioinformatics; 2012 Oct; 28(20):2648-53. PubMed ID: 22923304
[TBL] [Abstract][Full Text] [Related]
12. Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project.
Hucka M; Finney A; Bornstein BJ; Keating SM; Shapiro BE; Matthews J; Kovitz BL; Schilstra MJ; Funahashi A; Doyle JC; Kitano H
Syst Biol (Stevenage); 2004 Jun; 1(1):41-53. PubMed ID: 17052114
[TBL] [Abstract][Full Text] [Related]
13. CySBML: a Cytoscape plugin for SBML.
König M; Dräger A; Holzhütter HG
Bioinformatics; 2012 Sep; 28(18):2402-3. PubMed ID: 22772946
[TBL] [Abstract][Full Text] [Related]
14. Systems Biology Toolbox for MATLAB: a computational platform for research in systems biology.
Schmidt H; Jirstrand M
Bioinformatics; 2006 Feb; 22(4):514-5. PubMed ID: 16317076
[TBL] [Abstract][Full Text] [Related]
15. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.
Hucka M; Finney A; Sauro HM; Bolouri H; Doyle JC; Kitano H; Arkin AP; Bornstein BJ; Bray D; Cornish-Bowden A; Cuellar AA; Dronov S; Gilles ED; Ginkel M; Gor V; Goryanin II; Hedley WJ; Hodgman TC; Hofmeyr JH; Hunter PJ; Juty NS; Kasberger JL; Kremling A; Kummer U; Le Novère N; Loew LM; Lucio D; Mendes P; Minch E; Mjolsness ED; Nakayama Y; Nelson MR; Nielsen PF; Sakurada T; Schaff JC; Shapiro BE; Shimizu TS; Spence HD; Stelling J; Takahashi K; Tomita M; Wagner J; Wang J;
Bioinformatics; 2003 Mar; 19(4):524-31. PubMed ID: 12611808
[TBL] [Abstract][Full Text] [Related]
16. The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core.
Hucka M; Bergmann FT; Hoops S; Keating SM; Sahle S; Schaff JC; Smith LP; Wilkinson DJ
J Integr Bioinform; 2015 Sep; 12(2):266. PubMed ID: 26528564
[TBL] [Abstract][Full Text] [Related]
17. An automatic translation of SBML into Beta-binders.
Ciocchetta F; Priami C; Quaglia P
IEEE/ACM Trans Comput Biol Bioinform; 2008; 5(1):80-90. PubMed ID: 18245877
[TBL] [Abstract][Full Text] [Related]
18. The markup is the model: reasoning about systems biology models in the Semantic Web era.
Kell DB; Mendes P
J Theor Biol; 2008 Jun; 252(3):538-43. PubMed ID: 18054049
[TBL] [Abstract][Full Text] [Related]
19. SBML2L(A)T(E)X: conversion of SBML files into human-readable reports.
Dräger A; Planatscher H; Motsou Wouamba D; Schröder A; Hucka M; Endler L; Golebiewski M; Müller W; Zell A
Bioinformatics; 2009 Jun; 25(11):1455-6. PubMed ID: 19307240
[TBL] [Abstract][Full Text] [Related]
20. Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions.
Hucka M; Bergmann FT; Dräger A; Hoops S; Keating SM; Le Novère N; Myers CJ; Olivier BG; Sahle S; Schaff JC; Smith LP; Waltemath D; Wilkinson DJ
J Integr Bioinform; 2015 Sep; 12(2):271. PubMed ID: 26528569
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
