These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

216 related articles for article (PubMed ID: 21321130)

  • 61. PTMiner: Localization and Quality Control of Protein Modifications Detected in an Open Search and Its Application to Comprehensive Post-translational Modification Characterization in Human Proteome.
    An Z; Zhai L; Ying W; Qian X; Gong F; Tan M; Fu Y
    Mol Cell Proteomics; 2019 Feb; 18(2):391-405. PubMed ID: 30420486
    [TBL] [Abstract][Full Text] [Related]  

  • 62. Shape-based feature matching improves protein identification via LC-MS and tandem MS.
    Noy K; Towfic F; Wittenberg GM; Fasulo D
    J Comput Biol; 2011 Apr; 18(4):547-57. PubMed ID: 21417940
    [TBL] [Abstract][Full Text] [Related]  

  • 63. A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry.
    Pan C; Park BH; McDonald WH; Carey PA; Banfield JF; VerBerkmoes NC; Hettich RL; Samatova NF
    BMC Bioinformatics; 2010 Mar; 11():118. PubMed ID: 20205730
    [TBL] [Abstract][Full Text] [Related]  

  • 64. A turn-key approach for large-scale identification of complex posttranslational modifications.
    Wang J; Anania VG; Knott J; Rush J; Lill JR; Bourne PE; Bandeira N
    J Proteome Res; 2014 Mar; 13(3):1190-9. PubMed ID: 24437954
    [TBL] [Abstract][Full Text] [Related]  

  • 65. Protein identification using top-down.
    Liu X; Sirotkin Y; Shen Y; Anderson G; Tsai YS; Ting YS; Goodlett DR; Smith RD; Bafna V; Pevzner PA
    Mol Cell Proteomics; 2012 Jun; 11(6):M111.008524. PubMed ID: 22027200
    [TBL] [Abstract][Full Text] [Related]  

  • 66. Large precursor tolerance database search - a simple approach for estimation of the amount of spectra with precursor mass shifts in proteomic data.
    Weng RR; Chu LJ; Shu HW; Wu TH; Chen MC; Chang Y; Tsai YS; Wilson MC; Tsay YG; Goodlett DR; Ng WV
    J Proteomics; 2013 Oct; 91():375-84. PubMed ID: 23933159
    [TBL] [Abstract][Full Text] [Related]  

  • 67. Pepitome: evaluating improved spectral library search for identification complementarity and quality assessment.
    Dasari S; Chambers MC; Martinez MA; Carpenter KL; Ham AJ; Vega-Montoto LJ; Tabb DL
    J Proteome Res; 2012 Mar; 11(3):1686-95. PubMed ID: 22217208
    [TBL] [Abstract][Full Text] [Related]  

  • 68. Improving protein identification from tandem mass spectrometry data by one-step methods and integrating data from other platforms.
    Sikdar S; Gill R; Datta S
    Brief Bioinform; 2016 Mar; 17(2):262-9. PubMed ID: 26141827
    [TBL] [Abstract][Full Text] [Related]  

  • 69. An algorithm for identifying multiply modified endogenous proteins using both full-scan and high-resolution tandem mass spectrometric data.
    Mazur MT; Fyhr R
    Rapid Commun Mass Spectrom; 2011 Dec; 25(23):3617-26. PubMed ID: 22095511
    [TBL] [Abstract][Full Text] [Related]  

  • 70. Tandem mass spectrometry with ultrahigh mass accuracy clarifies peptide identification by database retrieval.
    Boyne MT; Garcia BA; Li M; Zamdborg L; Wenger CD; Babai S; Kelleher NL
    J Proteome Res; 2009 Jan; 8(1):374-9. PubMed ID: 19053528
    [TBL] [Abstract][Full Text] [Related]  

  • 71. On comparison of SimTandem with state-of-the-art peptide identification tools, efficiency of precursor mass filter and dealing with variable modifications.
    Novák J; Sachsenberg T; Hoksza D; Skopal T; Kohlbacher O
    J Integr Bioinform; 2013 Nov; 10(3):228. PubMed ID: 24231142
    [TBL] [Abstract][Full Text] [Related]  

  • 72. PeaksPTM: Mass spectrometry-based identification of peptides with unspecified modifications.
    Han X; He L; Xin L; Shan B; Ma B
    J Proteome Res; 2011 Jul; 10(7):2930-6. PubMed ID: 21609001
    [TBL] [Abstract][Full Text] [Related]  

  • 73. Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome.
    Peng J; Elias JE; Thoreen CC; Licklider LJ; Gygi SP
    J Proteome Res; 2003; 2(1):43-50. PubMed ID: 12643542
    [TBL] [Abstract][Full Text] [Related]  

  • 74. Identification of related peptides through the analysis of fragment ion mass shifts.
    Wilhelm T; Jones AM
    J Proteome Res; 2014 Sep; 13(9):4002-11. PubMed ID: 25058668
    [TBL] [Abstract][Full Text] [Related]  

  • 75. Accurate mass tag retention time database for urine proteome analysis by chromatography--mass spectrometry.
    Agron IA; Avtonomov DM; Kononikhin AS; Popov IA; Moshkovskii SA; Nikolaev EN
    Biochemistry (Mosc); 2010 May; 75(5):636-41. PubMed ID: 20632944
    [TBL] [Abstract][Full Text] [Related]  

  • 76. SpecOMS: A Full Open Modification Search Method Performing All-to-All Spectra Comparisons within Minutes.
    David M; Fertin G; Rogniaux H; Tessier D
    J Proteome Res; 2017 Aug; 16(8):3030-3038. PubMed ID: 28660767
    [TBL] [Abstract][Full Text] [Related]  

  • 77. Informed-Proteomics: open-source software package for top-down proteomics.
    Park J; Piehowski PD; Wilkins C; Zhou M; Mendoza J; Fujimoto GM; Gibbons BC; Shaw JB; Shen Y; Shukla AK; Moore RJ; Liu T; Petyuk VA; Tolić N; Paša-Tolić L; Smith RD; Payne SH; Kim S
    Nat Methods; 2017 Sep; 14(9):909-914. PubMed ID: 28783154
    [TBL] [Abstract][Full Text] [Related]  

  • 78. Ranking Fragment Ions Based on Outlier Detection for Improved Label-Free Quantification in Data-Independent Acquisition LC-MS/MS.
    Bilbao A; Zhang Y; Varesio E; Luban J; Strambio-De-Castillia C; Lisacek F; Hopfgartner G
    J Proteome Res; 2015 Nov; 14(11):4581-93. PubMed ID: 26412574
    [TBL] [Abstract][Full Text] [Related]  

  • 79. Cross-correlation of spectral count ranking to validate quantitative proteome measurements.
    Kannaste O; Suomi T; Salmi J; Uusipaikka E; Nevalainen O; Corthals GL
    J Proteome Res; 2014 Apr; 13(4):1957-68. PubMed ID: 24611565
    [TBL] [Abstract][Full Text] [Related]  

  • 80. Post-translational modifications of Desulfovibrio vulgaris Hildenborough sulfate reduction pathway proteins.
    Gaucher SP; Redding AM; Mukhopadhyay A; Keasling JD; Singh AK
    J Proteome Res; 2008 Jun; 7(6):2320-31. PubMed ID: 18416566
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 11.