247 related articles for article (PubMed ID: 21324185)
1. Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays.
Eichner J; Zeller G; Laubinger S; Rätsch G
BMC Bioinformatics; 2011 Feb; 12():55. PubMed ID: 21324185
[TBL] [Abstract][Full Text] [Related]
2. Whole-genome microarray in Arabidopsis facilitates global analysis of retained introns.
Ner-Gaon H; Fluhr R
DNA Res; 2006 Jun; 13(3):111-21. PubMed ID: 16980712
[TBL] [Abstract][Full Text] [Related]
3. Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays.
Stolc V; Samanta MP; Tongprasit W; Sethi H; Liang S; Nelson DC; Hegeman A; Nelson C; Rancour D; Bednarek S; Ulrich EL; Zhao Q; Wrobel RL; Newman CS; Fox BG; Phillips GN; Markley JL; Sussman MR
Proc Natl Acad Sci U S A; 2005 Mar; 102(12):4453-8. PubMed ID: 15755812
[TBL] [Abstract][Full Text] [Related]
4. Inference of alternative splicing from tiling array data.
Eichner J
Methods Mol Biol; 2013; 1067():143-64. PubMed ID: 23975791
[TBL] [Abstract][Full Text] [Related]
5. Transcript profiling in Arabidopsis with genome tiling microarrays.
Coman D; Gruissem W; Hennig L
Methods Mol Biol; 2013; 1067():35-49. PubMed ID: 23975784
[TBL] [Abstract][Full Text] [Related]
6. Genome-wide mapping of alternative splicing in Arabidopsis thaliana.
Filichkin SA; Priest HD; Givan SA; Shen R; Bryant DW; Fox SE; Wong WK; Mockler TC
Genome Res; 2010 Jan; 20(1):45-58. PubMed ID: 19858364
[TBL] [Abstract][Full Text] [Related]
7. Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution.
Wilhelm BT; Marguerat S; Watt S; Schubert F; Wood V; Goodhead I; Penkett CJ; Rogers J; Bähler J
Nature; 2008 Jun; 453(7199):1239-43. PubMed ID: 18488015
[TBL] [Abstract][Full Text] [Related]
8. Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis.
Marquez Y; Brown JW; Simpson C; Barta A; Kalyna M
Genome Res; 2012 Jun; 22(6):1184-95. PubMed ID: 22391557
[TBL] [Abstract][Full Text] [Related]
9. At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana.
Laubinger S; Zeller G; Henz SR; Sachsenberg T; Widmer CK; Naouar N; Vuylsteke M; Schölkopf B; Rätsch G; Weigel D
Genome Biol; 2008; 9(7):R112. PubMed ID: 18613972
[TBL] [Abstract][Full Text] [Related]
10. Exploring the relationship between intron retention and chromatin accessibility in plants.
Ullah F; Hamilton M; Reddy ASN; Ben-Hur A
BMC Genomics; 2018 Jan; 19(1):21. PubMed ID: 29304739
[TBL] [Abstract][Full Text] [Related]
11. Simultaneous genome-wide gene expression and transcript isoform profiling in the human malaria parasite.
Turnbull LB; Siwo GH; Button-Simons KA; Tan A; Checkley LA; Painter HJ; Llinás M; Ferdig MT
PLoS One; 2017; 12(11):e0187595. PubMed ID: 29112986
[TBL] [Abstract][Full Text] [Related]
12. Utilizing tiling microarrays for whole-genome analysis in plants.
Gregory BD; Yazaki J; Ecker JR
Plant J; 2008 Feb; 53(4):636-44. PubMed ID: 18269573
[TBL] [Abstract][Full Text] [Related]
13. Mining Arabidopsis thaliana RNA-seq data with Integrated Genome Browser reveals stress-induced alternative splicing of the putative splicing regulator SR45a.
Gulledge AA; Roberts AD; Vora H; Patel K; Loraine AE
Am J Bot; 2012 Feb; 99(2):219-31. PubMed ID: 22291167
[TBL] [Abstract][Full Text] [Related]
14. Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems.
Liu R; Loraine AE; Dickerson JA
BMC Bioinformatics; 2014 Dec; 15(1):364. PubMed ID: 25511303
[TBL] [Abstract][Full Text] [Related]
15. Assembly of a gene sequence tag microarray by reversible biotin-streptavidin capture for transcript analysis of Arabidopsis thaliana.
Wirta V; Holmberg A; Lukacs M; Nilsson P; Hilson P; Uhlén M; Bhalerao RP; Lundeberg J
BMC Biotechnol; 2005 Feb; 5():5. PubMed ID: 15689241
[TBL] [Abstract][Full Text] [Related]
16. Identification of alternative splicing events regulated by an Arabidopsis serine/arginine-like protein, atSR45a, in response to high-light stress using a tiling array.
Yoshimura K; Mori T; Yokoyama K; Koike Y; Tanabe N; Sato N; Takahashi H; Maruta T; Shigeoka S
Plant Cell Physiol; 2011 Oct; 52(10):1786-805. PubMed ID: 21862516
[TBL] [Abstract][Full Text] [Related]
17. A statistical framework for genome-wide discovery of biomarker splice variations with GeneChip Human Exon 1.0 ST Arrays.
Yoshida R; Numata K; Imoto S; Nagasaki M; Doi A; Ueno K; Miyano S
Genome Inform; 2006; 17(1):88-99. PubMed ID: 17503359
[TBL] [Abstract][Full Text] [Related]
18. Genome-wide study of NAGNAG alternative splicing in Arabidopsis.
Shi Y; Sha G; Sun X
Planta; 2014 Jan; 239(1):127-38. PubMed ID: 24097263
[TBL] [Abstract][Full Text] [Related]
19. RNA-Seq Analysis of Differential Splice Junction Usage and Intron Retentions by DEXSeq.
Li Y; Rao X; Mattox WW; Amos CI; Liu B
PLoS One; 2015; 10(9):e0136653. PubMed ID: 26327458
[TBL] [Abstract][Full Text] [Related]
20. IRcall and IRclassifier: two methods for flexible detection of intron retention events from RNA-Seq data.
Bai Y; Ji S; Wang Y
BMC Genomics; 2015; 16 Suppl 2(Suppl 2):S9. PubMed ID: 25707295
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]