These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

207 related articles for article (PubMed ID: 21335320)

  • 1. Topology and prediction of RNA pseudoknots.
    Reidys CM; Huang FW; Andersen JE; Penner RC; Stadler PF; Nebel ME
    Bioinformatics; 2011 Apr; 27(8):1076-85. PubMed ID: 21335320
    [TBL] [Abstract][Full Text] [Related]  

  • 2. An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots.
    Ruan J; Stormo GD; Zhang W
    Bioinformatics; 2004 Jan; 20(1):58-66. PubMed ID: 14693809
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
    Matsui H; Sato K; Sakakibara Y
    Proc IEEE Comput Syst Bioinform Conf; 2004; ():290-9. PubMed ID: 16448022
    [TBL] [Abstract][Full Text] [Related]  

  • 4. IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming.
    Sato K; Kato Y; Hamada M; Akutsu T; Asai K
    Bioinformatics; 2011 Jul; 27(13):i85-93. PubMed ID: 21685106
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
    Matsui H; Sato K; Sakakibara Y
    Bioinformatics; 2005 Jun; 21(11):2611-7. PubMed ID: 15784748
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Topology of RNA-RNA interaction structures.
    Andersen JE; Huang FW; Penner RC; Reidys CM
    J Comput Biol; 2012 Jul; 19(7):928-43. PubMed ID: 22731621
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Partition function and base pairing probabilities for RNA-RNA interaction prediction.
    Huang FW; Qin J; Reidys CM; Stadler PF
    Bioinformatics; 2009 Oct; 25(20):2646-54. PubMed ID: 19671692
    [TBL] [Abstract][Full Text] [Related]  

  • 8. HotKnots: heuristic prediction of RNA secondary structures including pseudoknots.
    Ren J; Rastegari B; Condon A; Hoos HH
    RNA; 2005 Oct; 11(10):1494-504. PubMed ID: 16199760
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Heuristic RNA pseudoknot prediction including intramolecular kissing hairpins.
    Sperschneider J; Datta A; Wise MJ
    RNA; 2011 Jan; 17(1):27-38. PubMed ID: 21098139
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Knotty: efficient and accurate prediction of complex RNA pseudoknot structures.
    Jabbari H; Wark I; Montemagno C; Will S
    Bioinformatics; 2018 Nov; 34(22):3849-3856. PubMed ID: 29868872
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Target prediction and a statistical sampling algorithm for RNA-RNA interaction.
    Huang FW; Qin J; Reidys CM; Stadler PF
    Bioinformatics; 2010 Jan; 26(2):175-81. PubMed ID: 19910305
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Effective alignment of RNA pseudoknot structures using partition function posterior log-odds scores.
    Song Y; Hua L; Shapiro BA; Wang JT
    BMC Bioinformatics; 2015 Feb; 16():39. PubMed ID: 25727492
    [TBL] [Abstract][Full Text] [Related]  

  • 13. AccessFold: predicting RNA-RNA interactions with consideration for competing self-structure.
    DiChiacchio L; Sloma MF; Mathews DH
    Bioinformatics; 2016 Apr; 32(7):1033-9. PubMed ID: 26589271
    [TBL] [Abstract][Full Text] [Related]  

  • 14. FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space.
    Chen X; He SM; Bu D; Zhang F; Wang Z; Chen R; Gao W
    Bioinformatics; 2008 Sep; 24(18):1994-2001. PubMed ID: 18586700
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Novel and efficient RNA secondary structure prediction using hierarchical folding.
    Jabbari H; Condon A; Zhao S
    J Comput Biol; 2008 Mar; 15(2):139-63. PubMed ID: 18312147
    [TBL] [Abstract][Full Text] [Related]  

  • 16. KnotSeeker: heuristic pseudoknot detection in long RNA sequences.
    Sperschneider J; Datta A
    RNA; 2008 Apr; 14(4):630-40. PubMed ID: 18314500
    [TBL] [Abstract][Full Text] [Related]  

  • 17. ProbKnot: fast prediction of RNA secondary structure including pseudoknots.
    Bellaousov S; Mathews DH
    RNA; 2010 Oct; 16(10):1870-80. PubMed ID: 20699301
    [TBL] [Abstract][Full Text] [Related]  

  • 18. PseudoViewer: automatic visualization of RNA pseudoknots.
    Han K; Lee Y; Kim W
    Bioinformatics; 2002; 18 Suppl 1():S321-8. PubMed ID: 12169562
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Capturing alternative secondary structures of RNA by decomposition of base-pairing probabilities.
    Hagio T; Sakuraba S; Iwakiri J; Mori R; Asai K
    BMC Bioinformatics; 2018 Feb; 19(Suppl 1):38. PubMed ID: 29504917
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The language of RNA: a formal grammar that includes pseudoknots.
    Rivas E; Eddy SR
    Bioinformatics; 2000 Apr; 16(4):334-40. PubMed ID: 10869031
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.